Pre_GI: BLASTP Hits

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Query: NC_003197:332086:339328 Salmonella typhimurium LT2, complete genome

Start: 339328, End: 339603, Length: 276

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:332060:339302339302339577276Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein2e-48190
NC_016857:329849:338806338806339081276Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein2e-48190
NC_016856:332771:340013340013340288276Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein2e-48190
NC_011080:333121:341372341372341647276Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein4e-43172
NC_016860:332087:339329339329339556228Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-38158
NC_011083:338910:346859346859347122264Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein4e-37152
NC_011149:309556:318927318927319184258Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein9e-30128
NC_012125:326909:332076332076332333258Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein5e-28122
NC_006905:326517:332206332206332463258Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein5e-28122
NC_011294:311796:317103317103317360258Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-27120
NC_011205:329155:341189341189341446258Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein3e-27120
NC_013421:385930:393088393088393399312Pectobacterium wasabiae WPP163, complete genomeDomain of unknown function DUF1813 HSP20-like protein1e-1788.2
NC_016845:4498097:452407745240774524370294Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein4e-1270.1
NC_016831:2667561:268641626864162686586171Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-1269.7
NC_011083:338910:348325348325348498174Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-1064.3
NC_013892:1272448:128445512844551284775321Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein1e-0961.6
NC_014228:2883500:289206628920662892386321Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0857.8
NC_014228:2883500:289921528992152899535321Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0857.8
NC_014228:1336466:134019513401951340548354Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein2e-0857.8
NC_015663:1356982:138018813801881380475288Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-0857
NC_010468:4059436:407232540723254072666342Escherichia coli ATCC 8739, complete genomeDomain of unknown function DUF1813, HSP20-like protein1e-0755.1
NC_012759:4501206:451600645160064516347342Escherichia coli BW2952 chromosome, complete genomeendoribonuclease SymE2e-0754.7
AC_000091:4569379:458417945841794584577399Escherichia coli W3110 DNA, complete genomehypothetical protein2e-0754.3
NC_012962:1068102:108993910899391090262324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE22e-0651.2
NC_012962:1068102:109771210977121098035324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE32e-0651.2
NC_012962:1068102:108243110824311082754324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE2e-0651.2
NC_012962:1068102:110472011047201105043324Photorhabdus asymbiotica, complete genomeputative endoribonuclease SymE42e-0651.2