Pre_GI: BLASTP Hits

Some Help

Query: NC_003064:22535:44659 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 44659, End: 45825, Length: 1167

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003306:22228:4435244352454791128Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein0777
NC_015976:2900891:2909680290968029107381059Sphingobium sp. SYK-6, complete genomehypothetical protein8e-61234
NC_014834:2206119:2257394225739422584731080Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein1e-54213
NC_009720:870194:8743398743398754451107Xanthobacter autotrophicus Py2, complete genomehypothetical protein1e-53210
NC_015730:1799500:1800482180048218015581077Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein1e-44181
NC_008435:4530797:4539451453945145404881038Rhodopseudomonas palustris BisA53, complete genomehypothetical protein9e-42171
NC_011901:1860887:188977518897751890755981Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein8e-39161
NC_010571:5650806:5650806565080656518311026Opitutus terrae PB90-1, complete genomeDomain of unknown function DUF18147e-36151
NC_008740:443274:4511294511294521571029Marinobacter aquaeolei VT8, complete genomehypothetical protein1e-34147
NC_017192:890718:910495910495911475981Arcobacter sp. L, complete genomehypothetical protein3e-33142
NC_008942:875060:8779278779278789401014Methanocorpusculum labreanum Z, complete genomehypothetical protein8e-33141
NC_012912:483390:5005255005255015441020Dickeya zeae Ech1591, complete genomeDomain of unknown function DUF18141e-29130
NC_013164:67500:788217882179804984Anaerococcus prevotii DSM 20548 plasmid pAPRE01, complete sequenceDomain of unknown function DUF18142e-29130
NC_014033:1301154:130567913056791306671993Prevotella ruminicola 23 chromosome, complete genomehypothetical protein7e-29128
NC_013421:1744928:1764565176456517655841020Pectobacterium wasabiae WPP163, complete genomeDomain of unknown function DUF18141e-27124
NC_009720:3377071:3383575338357533845911017Xanthobacter autotrophicus Py2, complete genomehypothetical protein2e-21103
NC_015381:2859000:2866984286698428680061023Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-20101
NC_011992:1381843:1387580138758013886261047Acidovorax ebreus TPSY, complete genomeDomain of unknown function DUF18146e-2099
NC_010725:3273261:3284752328475232857681017Methylobacterium populi BJ001, complete genomeprotein of unknown function DUF18141e-1997.8
NC_014414:2467639:247680824768082477749942Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein1e-1068.2
NC_014414:2491811:250226625022662503207942Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein2e-1067
NC_002950:879930:909579909579910577999Porphyromonas gingivalis W83, complete genomehypothetical protein1e-0964.3
NC_006347:1585191:1608807160880716098231017Bacteroides fragilis YCH46, complete genomehypothetical protein2e-0963.5
NC_020156:737063:740177740177741160984Nonlabens dokdonensis DSW-6, complete genomeDUF1814 domain containing protein4e-0962.8
NC_016776:1609476:1631352163135216323681017Bacteroides fragilis 638R, complete genomehypothetical protein4e-0962.8
NC_011830:4951716:4962537496253749635441008Desulfitobacterium hafniense DCB-2, complete genomeDomain of unknown function DUF18148e-0755.1
NC_007907:5428247:5443265544326554443111047Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-0755.1
NC_010995:1417329:142044914204491421408960Cellvibrio japonicus Ueda107, complete genomehypothetical protein5e-0652.8