Pre_GI: BLASTP Hits

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Query: NC_003063:2059311:2067381 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 2067381, End: 2068160, Length: 780

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1:659665967375780Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein2e-151534
NC_008686:1180388:118534311853431186215873Paracoccus denitrificans PD1222 chromosome 1, complete sequenceActivator of Hsp90 ATPase 1 family protein3e-113407
NC_016935:2347691:242325024232502424122873Paenibacillus mucilaginosus 3016 chromosome, complete genomeActivator of Hsp90 ATPase 1 family protein1e-25117
NC_012489:3425416:344375734437573444722966Gemmatimonas aurantiaca T-27, complete genomehypothetical protein2e-21103
NC_008269:667228:685930685930686436507Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencehypothetical protein4e-1995.1
NC_013061:2775623:278519927851992785687489Pedobacter heparinus DSM 2366, complete genomeActivator of Hsp90 ATPase 1 family protein5e-1478.6
NC_016609:4331359:434957643495764350055480Niastella koreensis GR20-10 chromosome, complete genomeActivator of Hsp90 ATPase 1 family protein1e-1273.6
NC_010524:4644587:466256146625614663448888Leptothrix cholodnii SP-6, complete genomeActivator of Hsp90 ATPase 1 family protein1e-1067
NC_009665:593359:607227607227607706480Shewanella baltica OS185 chromosome, complete genomeactivator of Hsp90 ATPase 1 family protein5e-1065.1
NC_009052:4437649:444172044417204442199480Shewanella baltica OS155, complete genomeActivator of Hsp90 ATPase 1 family protein9e-1064.3
NC_012914:5225609:525417152541715254683513Paenibacillus sp. JDR-2, complete genomeActivator of Hsp90 ATPase 1 family protein3e-0962.4
NC_015663:2694373:269913326991332699609477Enterobacter aerogenes KCTC 2190 chromosome, complete genomeactivator of Hsp90 ATPase 1 family protein6e-0961.2
NC_020181:2714559:274618327461832746659477Enterobacter aerogenes EA1509E, complete genomeProbable glutathione S-transferase-related transmembrane protein6e-0961.2
NC_013730:3695674:370276837027683703271504Spirosoma linguale DSM 74, complete genomeActivator of Hsp90 ATPase 1 family protein2e-0859.7
NC_008027:4280000:428494742849474285432486Pseudomonas entomophila L48, complete genomehypothetical protein7e-0857.8
NC_016935:4233223:428424842842484284760513Paenibacillus mucilaginosus 3016 chromosome, complete genomeactivator of Hsp90 ATPase 1 family protein1e-0757
NC_009380:2310000:232029223202922320768477Salinispora tropica CNB-440 chromosome, complete genomeactivator of Hsp90 ATPase 1 family protein4e-0755.5
NC_010511:7553703:756213875621387562674537Methylobacterium sp. 4-46 chromosome, complete genomeactivator of Hsp90 ATPase 1 family protein5e-0755.1
NC_012997:4491871:450711245071124507576465Teredinibacter turnerae T7901, complete genomeactivator of Hsp90 ATPase 1 family protein1e-0653.5
NC_016646:275818:281484281484281927444Pseudovibrio sp. FO-BEG1 plasmid unnamed, complete sequenceActivator of Hsp90 ATPase3e-0652.4
NC_009338:3410349:342849534284953428983489Mycobacterium gilvum PYR-GCK chromosome, complete genomeactivator of Hsp90 ATPase 1 family protein4e-0652
NC_014814:2588628:264032426403242640812489Mycobacterium sp. Spyr1 chromosome, complete genomehypothetical protein4e-0652
NC_014623:1600360:162171616217161622192477Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeactivator of hsp90 ATPase-like protein6e-0651.6