Pre_GI: BLASTP Hits

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Query: NC_003063:2059311:2066105 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 2066105, End: 2066671, Length: 567

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1:808580858774690Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein3e-106384
NC_011989:2795811:280054228005422801516975Agrobacterium vitis S4 chromosome 1, complete sequencehypothetical protein2e-1479
NC_012724:2547500:255957125595712560557987Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein3e-1271.6
NC_011989:2795811:2801580280158028025871008Agrobacterium vitis S4 chromosome 1, complete sequencehypothetical protein1e-1066.2
NC_015381:3607626:3620557362055736216451089Burkholderia gladioli BSR3 chromosome 1, complete sequenceGP30 family protein1e-0963.2
NC_015761:1970042:198715119871511988134984Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-0962.8
NC_011989:2795811:2799426279942628004661041Agrobacterium vitis S4 chromosome 1, complete sequencehypothetical protein1e-0756.6
NC_015381:1588742:159127115912711591951681Burkholderia gladioli BSR3 chromosome 1, complete sequenceGP30 family protein5e-0753.9