Pre_GI: BLASTP Hits

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Query: NC_002505:238569:262098 Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete

Start: 262098, End: 262319, Length: 222

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016944:238580:262067262067262330264Vibrio cholerae IEC224 chromosome I, complete sequenceRfbT-likeprotein1e-37154
NC_016445:2663837:268732426873242688226903Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeRfbT-related protein2e-32137
NC_012578:224559:248086248086248946861Vibrio cholerae M66-2 chromosome I, complete sequencerfbT-like protein3e-32137
NC_012582:272320:295841295841296701861Vibrio cholerae O395 chromosome chromosome I, complete sequencerfbT-related protein6e-31132
NC_009457:2764972:278849327884932789353861Vibrio cholerae O395 chromosome 2, complete sequenceRfbT protein6e-31132
NC_012668:368305:376021376021376839819Vibrio cholerae MJ-1236 chromosome 1, complete sequenceRfbT protein4e-23106