Pre_GI: BLASTP Hits

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Query: NC_001264:28266:39026 Deinococcus radiodurans R1 chromosome 2, complete sequence

Start: 39026, End: 40288, Length: 1263

Host Lineage: Deinococcus radiodurans; Deinococcus; Deinococcaceae; Deinococcales; Deinococcus-Thermus; Bacteria

General Information: This red-pigmented organism's name means "strange berry that withstands radiation", marking the fact that this organism is one of the most radiation-resistant known. It can tolerate radiation levels at 1000 times the levels that would kill a human and it was originally isolated in 1956 from a can of meat that had been irradiated with X-rays. The resistance to radiation may reflect its resistance to dessication, which also causes DNA damage. This organism may be of use in cleaning up toxic metals found at nuclear weapons production sites due to the radiation resistance. This bacterium is also a highly efficient transformer, and can readily take up exogenous DNA from the environment, which may also aid DNA repair. This organism carries multiple copies of many DNA repair genes, suggesting a robust system for dealing with DNA damage. The recombination system may rely on multiple copies of various repeat elements found throughout the genome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014974:246404:2509712509712522931323Thermus scotoductus SA-01 chromosome, complete genomeO-antigen transporter1e-27124
NC_017272:607900:6201606201606214491290Thermus thermophilus SG0.5JP17-16 chromosome, complete genomepolysaccharide biosynthesis protein2e-26120
NC_014212:2776457:2790238279023827914761239Meiothermus silvanus DSM 9946 chromosome, complete genomepolysaccharide biosynthesis protein7e-26118
NC_013946:2050871:2064784206478420660581275Meiothermus ruber DSM 1279 chromosome, complete genomepolysaccharide biosynthesis protein2e-25117
NC_015185:1352171:1353568135356813548481281Desulfurobacterium thermolithotrophum DSM 11699 chromosome,polysaccharide biosynthesis protein2e-22107
NC_006510:3321426:3363539336353933647981260Geobacillus kaustophilus HTA426, complete genomeO-antigen transporter2e-21103
NC_011916:467106:4804394804394817101272Caulobacter crescentus NA1000 chromosome, complete genomeoligosaccharide translocase/flippase7e-21102
NC_006461:605249:6171536171536184181266Thermus thermophilus HB8, complete genomeputative O-antigen transporter1e-20101
NC_006510:3321426:3341644334164433429331290Geobacillus kaustophilus HTA426, complete genomeO-antigen transporter2e-1997.4
NC_009655:866281:8748968748968761521257Actinobacillus succinogenes 130Z chromosome, complete genomepolysaccharide biosynthesis protein3e-1893.6
NC_020064:1547524:1581589158158915828121224Serratia marcescens FGI94, complete genomemembrane protein involved in the export of O-antigen and teichoic acid4e-1789.4
NC_014935:1389000:1409861140986114111321272Nitratifractor saLSUginis DSM 16511 chromosome, complete genomepolysaccharide biosynthesis protein1e-1687.8
NC_010831:2078329:2094543209454320958171275Chlorobium phaeobacteroides BS1, complete genomepolysaccharide biosynthesis protein2e-1687.4
NC_006300:600516:6091126091126104041293Mannheimia succiniciproducens MBEL55E, complete genomeRfbX protein7e-1685.5
NC_014758:1207894:1237144123714412384271284Calditerrivibrio nitroreducens DSM 19672 chromosome, completepolysaccharide biosynthesis protein2e-1584
NC_014119:977136:9835949835949848591266Burkholderia sp. CCGE1002 chromosome chromosome 3, completepolysaccharide biosynthesis protein6e-1582.4
NC_007606:1999870:2010259201025920114491191Shigella dysenteriae Sd197, complete genomeputative O-antigen transporter9e-1581.6
NC_011415:2346474:2365729236572923669791251Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-1377.4
NC_015966:2256943:2273729227372922749701242Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomepolysaccharide biosynthesis protein6e-1375.5
NC_010681:934374:9486099486099498681260Burkholderia phytofirmans PsJN chromosome 1, complete sequencepolysaccharide biosynthesis protein9e-1375.1
NC_020054:1002906:1009197100919710104951299Fibrella aestuarina BUZ 2 drat genomeputative O-antigen transporter2e-1273.9
NC_011001:1462532:1480615148061514818681254Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative exopolysaccharide transporter4e-1273.2
NC_014408:682689:7036937036937049521260Methanothermobacter marburgensis str. Marburg chromosome, completepolysaccharide biosynthesis protein5e-1272.8
NC_015224:1391088:1399234139923414004901257Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,translocase2e-1170.9
NC_013730:7743954:7755334775533477566291296Spirosoma linguale DSM 74, complete genomepolysaccharide biosynthesis protein4e-1066.2
NC_013894:117644:1321121321121333981287Thermocrinis albus DSM 14484 chromosome, complete genomepolysaccharide biosynthesis protein4e-1066.2
NC_006582:3827844:3842212384221238434891278Bacillus clausii KSM-K16, complete genomeO-antigen transporter8e-0962
NC_007511:2072838:2072838207283820740941257Burkholderia sp. 383 chromosome 2, complete sequencePolysaccharide biosynthesis protein8e-0962
NC_012779:1286500:1294276129427612955231248Edwardsiella ictaluri 93-146, complete genomeO antigen transporter5e-0859.3
AC_000091:2096672:2110474211047421117211248Escherichia coli W3110 DNA, complete genomepredicted polisoprenol-linked O-antigen transporter6e-0858.9
NC_000913:2092559:2106361210636121076081248Escherichia coli K12, complete genomepredicted polisoprenol-linked O-antigen transporter6e-0858.9
NC_010473:2183567:2197369219736921986161248Escherichia coli str. K-12 substr. DH10B, complete genomepredicted polisoprenol-linked O-antigen transporter6e-0858.9
NC_012759:1983975:1998844199884420000911248Escherichia coli BW2952 chromosome, complete genomeputative polisoprenol-linked O-antigen transporter6e-0858.9
NC_004757:2451919:246404024640402464840801Nitrosomonas europaea ATCC 19718, complete genome6e-0858.9
NC_008563:2182270:2195479219547921967051227Escherichia coli APEC O1, complete genomeputative O-antigen transporter6e-0858.9
NC_011026:2450325:2463753246375324650031251Chloroherpeton thalassium ATCC 35110, complete genomepolysaccharide biosynthesis protein5e-0755.8
NC_012483:30784:6336163361647131353Acidobacterium capsulatum ATCC 51196, complete genomeputative O-antigen transporter9e-0755.1
NC_013204:2826500:2838118283811828394131296Eggerthella lenta DSM 2243, complete genomepolysaccharide biosynthesis protein2e-0653.9
NC_013508:1289159:1296989129698912981041116Edwardsiella tarda EIB202, complete genomeO-unit translocase (flippase)1e-0551.6