Pre_GI: OUP Neighbours

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Query: NC_005126:4423964 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

D: 31.7242

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.

Number of Neighbours: 5




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_009925:6024888Acaryochloris marina MBIC11017, complete genome75.1838 %Subject ←→ Query29.7141
NC_006139:31500Desulfotalea psychrophila LSv54 plasmid large, complete sequence75.6036 %Subject Query42.5492
NC_010814:1551624Geobacter lovleyi SZ, complete genome76.7739 %Subject Query44.2581
NC_005071:288922*Prochlorococcus marinus str. MIT 9313, complete genome75.1379 %Subject ←→ Query31.4016
NC_004460:1313468Vibrio vulnificus CMCP6 chromosome II, complete sequence75.9375 %Subject ←→ Query33.3414