Pre_GI: OUP Neighbours

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Query: NC_016894:3114394 Acetobacterium woodii DSM 1030 chromosome, complete genome

D: 26.8405

Host Lineage: Acetobacterium woodii; Acetobacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Can use alternative electron acceptors like the lignin degradation product caffeate.

Number of Neighbours: 24




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_016894:2931213*Acetobacterium woodii DSM 1030 chromosome, complete genome85.4197 %Subject ←→ Query22.8052
NC_016894:1092005*Acetobacterium woodii DSM 1030 chromosome, complete genome81.6667 %Subject ←→ Query24.1184
NC_016609:8772011Niastella koreensis GR20-10 chromosome, complete genome75.4534 %Subject ←→ Query24.7922
NC_016894:3935161Acetobacterium woodii DSM 1030 chromosome, complete genome75.8241 %Subject ←→ Query28.6114
NC_016609:7565483Niastella koreensis GR20-10 chromosome, complete genome75.3493 %Subject ←→ Query30.5573
NC_015703:1992000*Runella slithyformis DSM 19594 chromosome, complete genome76.5993 %Subject ←→ Query31.5564
NC_016609:3576490Niastella koreensis GR20-10 chromosome, complete genome76.973 %Subject ←→ Query32.1473
NC_017501:543000Neisseria meningitidis 8013, complete genome75.9314 %Subject ←→ Query35.1307
NC_017190:871352Bacillus amyloliquefaciens LL3 chromosome, complete genome77.8738 %Subject ←→ Query35.6367
NC_014624:1768226Eubacterium limosum KIST612 chromosome, complete genome78.6336 %Subject ←→ Query35.9105
NC_016641:2894899Paenibacillus terrae HPL-003 chromosome, complete genome75.7322 %Subject Query37.4094
NC_017188:2221705Bacillus amyloliquefaciens TA208 chromosome, complete genome75.1685 %Subject Query39.9662