Pre_GI: OUP Neighbours

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Query: NC_013410:1152188 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

D: 37.6377

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

Number of Neighbours: 22




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014650:2969866*Geobacillus sp. Y4.1MC1 chromosome, complete genome76.2623 %Subject ←→ Query28.9698
NC_020210:1275031*Geobacillus sp. GHH01, complete genome76.2132 %Subject ←→ Query33.58
NC_016593:596500Geobacillus thermoleovorans CCB_US3_UF5 chromosome, complete75.723 %Subject ←→ Query34.0351
NC_006270:718169*Bacillus licheniformis ATCC 14580, complete genome75.3585 %Subject ←→ Query34.0791
NC_006270:204000*Bacillus licheniformis ATCC 14580, complete genome76.9669 %Subject ←→ Query34.2838
NC_006270:568171*Bacillus licheniformis ATCC 14580, complete genome75.7138 %Subject ←→ Query34.4572
NC_006270:2657726*Bacillus licheniformis ATCC 14580, complete genome75.5637 %Subject ←→ Query36.0328
NC_013410:1591500Fibrobacter succinogenes subsp. succinogenes S85 chromosome,78.5509 %Subject ←→ Query36.7668
NC_009328:2378345Geobacillus thermodenitrificans NG80-2 chromosome, complete genome76.2868 %Subject ←→ Query39.8234
NC_020210:2133996*Geobacillus sp. GHH01, complete genome78.9185 %Subject ←→ Query41.2844
NC_013037:6281164*Dyadobacter fermentans DSM 18053, complete genome77.2365 %Subject ←→ Query45.9244