Pre_GI: OUP Neighbours

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Query: NC_008525:108687 Pediococcus pentosaceus ATCC 25745, complete genome

D: 30.0765

Host Lineage: Pediococcus pentosaceus; Pediococcus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Use in fermentation of food products. A distinctive characteristic of pediococci is their ability to form tetrads via cell division in two perpendicular directions in a single plane. Like other lactic acid bacteria, species of Pediococcus are acid tolerant, cannot synthesize porphyrins, and possess a strictly fermentative (homofermentative) facultatively anaerobic metabolism with lactic acid as the major metabolic end product. They also occur in such food products as cured meat, raw sausages, and marinated fish, and are are used for biotechnological processing and preservation of foods. This bacterium can be isolated from a variety of plant materials and bacterial-ripened cheeses. This organism is used as an acid producing starter culture in the fermentation of some sausages, cucumbers, green beans, soy milk, and silage. Some strains have been reported to contain several (3-5) resident plasmids that render the bacterium capable of fermenting some sugars (raffinose, melibiose, and sucrose), as well as producing bacteriocins.

Number of Neighbours: 8




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_003210:721824Listeria monocytogenes EGD-e, complete genome78.4467 %Subject ←→ Query22.1346
NC_002973:730942Listeria monocytogenes str. 4b F2365, complete genome77.9351 %Subject ←→ Query22.6302
NC_013893:359842Staphylococcus lugdunensis HKU09-01 chromosome, complete genome76.9547 %Subject ←→ Query24.2742
NC_015603:1Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequence75.1195 %Subject ←→ Query26.2642
NC_004668:3118500Enterococcus faecalis V583, complete genome76.4675 %Subject ←→ Query28.4525
NC_002952:1497785Staphylococcus aureus subsp. aureus MRSA252, complete genome75.0123 %Subject ←→ Query29.2682
NC_015460:1687684*Gallibacterium anatis UMN179 chromosome, complete genome77.5337 %Subject ←→ Query33.257
NC_010610:107500Lactobacillus fermentum IFO 3956, complete genome75.8517 %Subject Query41.4381