Pre_GI: OUP MCL Sub Cluster Neighbours

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Query: NC_016894:3527364 Acetobacterium woodii DSM 1030 chromosome, complete genome

D: 29.1005

Host Lineage: Acetobacterium woodii; Acetobacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Can use alternative electron acceptors like the lignin degradation product caffeate.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host DescriptionProposed Island FlowSubject Island D
NC_007503:1486000Carboxydothermus hydrogenoformans Z-2901, complete genomeSubject ←→ Query25.2756
NC_020134:2772500Clostridium stercorarium subsp. stercorarium DSM 8532, completeSubject ←→ Query27.3127
NC_009253:1265474Desulfotomaculum reducens MI-1 chromosome, complete genomeSubject ←→ Query29.0947
NC_016894:3527364Acetobacterium woodii DSM 1030 chromosome, complete genomeSubject ←→ Query29.1005
NC_021184:4524500*Desulfotomaculum gibsoniae DSM 7213, complete genomeSubject ←→ Query30.6755
NC_015520:595532*Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query31.4658
NC_021184:4493440Desulfotomaculum gibsoniae DSM 7213, complete genomeSubject ←→ Query31.671
NC_021184:1*Desulfotomaculum gibsoniae DSM 7213, complete genomeSubject ←→ Query31.7483
NC_015520:2821406Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query32.9861
NC_015520:2280643*Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query33.0691
NC_015520:2567329Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query33.3587
NC_015520:55710*Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query33.5687
NC_014624:2878457Eubacterium limosum KIST612 chromosome, complete genomeSubject ←→ Query33.5816
NC_016894:77853Acetobacterium woodii DSM 1030 chromosome, complete genomeSubject ←→ Query34.0577
NC_015520:3060495Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query34.2391
NC_015520:2612767Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query35.4815
NC_015520:3038770Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query36.2273
NC_015520:1619000Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query36.7887
NC_015520:2859820Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query37.1839
NC_015520:330500*Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query37.3893
NC_015520:224136*Mahella australiensis 50-1 BON chromosome, complete genomeSubject ←→ Query37.9888
NC_015520:1683616Mahella australiensis 50-1 BON chromosome, complete genomeSubject Query42.3664