Pre_GI: OUP MCL Sub Cluster Neighbours

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Query: NC_010322:4623867 Pseudomonas putida GB-1 chromosome, complete genome

D: 29.0414

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host DescriptionProposed Island FlowSubject Island D
NC_010322:4623867Pseudomonas putida GB-1 chromosome, complete genomeSubject ←→ Query29.0414
NC_008576:2868986Magnetococcus sp. MC-1, complete genomeSubject ←→ Query30.4961
NC_008576:2011959Magnetococcus sp. MC-1, complete genomeSubject ←→ Query31.9492
NC_008576:4467745Magnetococcus sp. MC-1, complete genomeSubject ←→ Query31.9553
NC_008576:777949*Magnetococcus sp. MC-1, complete genomeSubject ←→ Query31.9796
NC_008576:1413778*Magnetococcus sp. MC-1, complete genomeSubject ←→ Query32.0698
NC_008576:3307297*Magnetococcus sp. MC-1, complete genomeSubject ←→ Query32.4052
NC_008576:357893*Magnetococcus sp. MC-1, complete genomeSubject ←→ Query32.5268
NC_016646:275818Pseudovibrio sp. FO-BEG1 plasmid unnamed, complete sequenceSubject ←→ Query32.8081
NC_008576:677128Magnetococcus sp. MC-1, complete genomeSubject ←→ Query33.5056
NC_016642:3286654Pseudovibrio sp. FO-BEG1 chromosome, complete genomeSubject ←→ Query35.5668
NC_008576:1061171*Magnetococcus sp. MC-1, complete genomeSubject ←→ Query36.2932
NC_008576:3812500*Magnetococcus sp. MC-1, complete genomeSubject ←→ Query38.112
NC_008576:4130000Magnetococcus sp. MC-1, complete genomeSubject ←→ Query38.792
NC_008576:2458573*Magnetococcus sp. MC-1, complete genomeSubject Query39.1415
NC_008576:4701930*Magnetococcus sp. MC-1, complete genomeSubject Query40.4821