Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_017986: Pseudomonas putida ND6 chromosome, complete genome

NCBI: NC_017986

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133161037435142742Island text1.6927226.262427.4852Neighbours11BLASTN+IslandViewer 331610.gbk
240989942867718779Island text1.594522.468819.5273Neighbours11BLASTN+IslandViewer 409899.gbk
31042642106260919968Island text2.7136729.026337.4605BLASTN+1042642.gbk
41128879115261023732Island text1.5063322.908623.724Neighbours11BLASTN1128879.gbk
51155811118695831148Island text1.5956922.324930.1803Neighbours11BLASTN+IslandViewer 1155811.gbk
61862408188351721110Island text2.762335.922131.754Neighbours11BLASTN+IslandViewer 1862408.gbk
71885613193939953787Island text2.7772828.354442.6087Neighbours11BLASTN+IslandViewer 1885613.gbk
82548720*260441555696Island text1.6640724.019640.1267Neighbours11BLASTN+IslandViewer 2548720.gbk
92687588271929431707Island text2.0269529.247329.7982Neighbours11BLASTN+IslandViewer 2687588.gbk
102985514300587920366Island text2.2520227.419128.297Neighbours11BLASTN+IslandViewer 2985514.gbk
113283433330741423982Island text2.935535.550627.5376Neighbours11BLASTN+3283433.gbk
123407913*343767129759Island text2.9378230.707441.5568Neighbours11BLASTN+IslandViewer 3407913.gbk
134091051411079319743Island text1.7057823.757322.1053Neighbours11BLASTN+IslandViewer 4091051.gbk
144124335415486430530Island text2.578729.657742.6995Neighbours11BLASTN+IslandViewer 4124335.gbk
154374979440112526147Island text1.3686624.659536.3625Neighbours11BLASTNIslandViewer 4374979.gbk
164790482484293052449Island text2.4754927.333341.7921Neighbours11BLASTN+IslandViewer 4790482.gbk
174885979*491073324755Island text3.0075535.531236.6416Neighbours11BLASTN+IslandViewer 4885979.gbk
184931104495813227029Island text2.5677427.320438.5238Neighbours11BLASTN+IslandViewer 4931104.gbk
195421000544330622307Island text1.5540422.224638.7075Neighbours11BLASTN+IslandViewer 5421000.gbk
205467279*548855121273Island text3.2033737.813239.9588Neighbours11BLASTN+5467279.gbk
215509569553054920981Island text2.668835.292340.0228Neighbours11BLASTN+IslandViewer 5509569.gbk
225605197563850733311Island text3.0731835.39930.8186BLASTN+5605197.gbk
235797044582590228859Island text1.6796724.22834.9057Neighbours11BLASTN+IslandViewer 5797044.gbk
245833819586161427796Island text1.6725623.74635.1069Neighbours11BLASTN+IslandViewer 5833819.gbk
255867782*589059922818Island text1.765424.433722.4733Neighbours11BLASTN+5867782.gbk