Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_016776: Bacteroides fragilis 638R, complete genome

NCBI: NC_016776

Host Lineage: Bacteroides fragilis; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. Breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides is aided by the many enzymes these organisms produce. Although only a minor component of the human gut microflora, this organism is a major component of clinical specimens and is the most common anaerobe isolated.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1662239483128609Island text1.736438.553544.8686Neighbours34BLASTN+66223.gbk
221550023730421805Island text1.6255137.626336.2982Neighbours312BLASTN+IslandViewer 215500.gbk
324664827606529418Island text1.7789846.527535.4245BLASTN+IslandViewer 246648.gbk
444915047488825739Island text1.5695435.694349.4214Neighbours34BLASTN449150.gbk
5625628*64831722690Island text1.511834.241251.0964Neighbours34BLASTN+625628.gbk
670168472515023467Island text2.013638.290152.5051Neighbours34BLASTN701684.gbk
784464186509920459Island text1.5306136.166142.4339Neighbours34BLASTN844641.gbk
8998657102158122925Island text1.7832537.752849.7974Neighbours34BLASTN998657.gbk
91470596*149420323608Island text1.6538132.587545.7547Neighbours34BLASTN+1470596.gbk
101609476163359924124Island text1.7864841.540254.6631Neighbours327BLASTNIslandViewer 1609476.gbk
111836000185823422235Island text1.5414136.473146.1732Neighbours34BLASTN1836000.gbk
121878791189709918309Island text1.4892636.65839.4141Neighbours34BLASTN+1878791.gbk
132161716*218134019625Island text1.6706334.540752.3602Neighbours34BLASTN2161716.gbk
142237404226022922826Island text1.9249236.12955.5062Neighbours34BLASTN+2237404.gbk
152411154244805136898Island text1.8284639.998844.0775Neighbours34BLASTN+IslandViewer 2411154.gbk
162473318249264219325Island text1.7277837.396654.3078Neighbours34BLASTN2473318.gbk
172516149254174225594Island text1.5007335.365639.419Neighbours34BLASTN+2516149.gbk
182549465*256710117637Island text1.4842638.387635.187BLASTN2549465.gbk
192913966*293836624401Island text1.6323334.140549.5452Neighbours34BLASTN2913966.gbk
202956444*300059944156Island text1.6111136.317841.8857BLASTNIslandViewer 2956444.gbk
213181706320169619991Island text1.6834935.847854.0496Neighbours34BLASTN+3181706.gbk
223258939*328671627778Island text1.4531834.843154.1053Neighbours34BLASTN+IslandViewer 3258939.gbk
233356718*338962832911Island text1.6489834.536154.358Neighbours34BLASTN3356718.gbk
243485688*350798622299Island text1.730940.080347.3585Neighbours34BLASTN+3485688.gbk
253587983*361017322191Island text1.5167738.008731.2868Neighbours34BLASTNIslandViewer 3587983.gbk
263626541364694820408Island text1.5328634.373144.9998Neighbours34BLASTN3626541.gbk
273691453*371290321451Island text1.4954736.43648.1575Neighbours34BLASTN+3691453.gbk
283714642376017745536Island text1.6260834.590252.7299Neighbours34BLASTN+3714642.gbk
293798108381659918492Island text1.6890336.948350.5256Neighbours34BLASTN3798108.gbk
303973428400936635939Island text1.5367433.979851.1816Neighbours34BLASTN+3973428.gbk
314115889413834422456Island text1.6197435.511953.9834Neighbours34BLASTN+IslandViewer 4115889.gbk
324525065*454809923035Island text1.797935.581445.8357Neighbours34BLASTN4525065.gbk
334982094*500421622123Island text1.6089635.2950.1035BLASTN4982094.gbk
345114211513309918889Island text1.5485434.800652.9114Neighbours34BLASTN5114211.gbk
355174606524455269947Island text1.5108635.390346.1627Neighbours327BLASTN+IslandViewer 5174606.gbk