Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014931: Variovorax paradoxus EPS chromosome, complete genome

NCBI: NC_014931

Host Lineage: Variovorax paradoxus; Variovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Environment: Soil; Temp: Mesophile. Variovorax paradoxus is a nutritionally diverse organism which is commonly isolated from soil. Strains of this organism are able to degrade a number of compounds such as explosives and pesticides. Variovorax paradoxus is also a plant-growth promoting organism, increasing the resistance of the plant to disease and heavy metals.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1724102*75590331802Island text1.8148121.143517.3865Neighbours11BLASTNIslandViewer 724102.gbk
21044313*107060326291Island text1.5621521.826423.9493Neighbours11BLASTN1044313.gbk
31642179*167070028522Island text1.4859516.153923.8701Neighbours11BLASTN+1642179.gbk
42336465236070324239Island text1.6892422.11733.5668Neighbours11BLASTN+2336465.gbk
52511423253417122749Island text1.5225818.944620.7394Neighbours11BLASTN+IslandViewer 2511423.gbk
62929695*295251022816Island text1.5108216.117518.1386Neighbours11BLASTN+IslandViewer 2929695.gbk
72949697297109921403Island text1.8921515.833718.5918Neighbours11BLASTN+IslandViewer 2949697.gbk
83642779366467121893Island text1.528319.884924.0935Neighbours11BLASTN3642779.gbk
93886405*390909922695Island text1.746618.741516.2419Neighbours11BLASTN3886405.gbk
104210029*424439734369Island text1.6537421.617523.3308Neighbours11BLASTN+IslandViewer 4210029.gbk
114234288*426496730680Island text1.7527417.240920.7077Neighbours11BLASTN+IslandViewer 4234288.gbk
124490526*451036419839Island text1.5449716.593226.0019Neighbours11BLASTN+4490526.gbk
134985500500477719278Island text1.5447318.091431.6279Neighbours11BLASTN+IslandViewer 4985500.gbk
145088125*512272134597Island text2.7608729.117527.2584Neighbours11BLASTN+IslandViewer 5088125.gbk
155470242549225522014Island text1.5635920.723320.0825Neighbours11BLASTN5470242.gbk
165573942559409920158Island text1.6349317.60412.7644Neighbours11BLASTN+IslandViewer 5573942.gbk
175594946561508820143Island text1.5094119.97221.7566Neighbours11BLASTNIslandViewer 5594946.gbk
186031645605636324719Island text1.4463915.789219.7953Neighbours11BLASTN+IslandViewer 6031645.gbk
196203872625051746646Island text1.5822419.158932.7909Neighbours11BLASTN+6203872.gbk
206415940643897523036Island text1.5074616.786228.9804Neighbours11BLASTN+6415940.gbk