Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_014614: Clostridium sticklandii, complete genome

NCBI: NC_014614

Host Lineage: Clostridium sticklandii; Clostridium; unclassified Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This Clostridium (HF strain, ATCC 12662) was initially found associated with Methanococcus vannieli in formate-enriched cultures. After its isolation in pure culture, it was shown that this organism is capable of fermenting amino acids. Biochemical studies have shown that C. sticklandii obtains energy for growth from oxidation-reduction reactions between specific amino acid pairs. Clostridium sticklandii is a Gram-positive bacterium with low (G +C) content that is capable of fermenting amino acids.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
16115*4920643092Island text2.9521623.470840.1544Neighbours21BLASTN+6115.gbk
28621310565919447Island text1.6874420.063233.1222Neighbours21BLASTN+IslandViewer 86213.gbk
326078228259921818Island text1.594123.575130.3074Neighbours21BLASTN260782.gbk
4284005*31809934095Island text2.1581824.194935.9384Neighbours21BLASTN+284005.gbk
535674640601049265Island text2.1045323.906637.6402Neighbours21BLASTN356746.gbk
643200045131019311Island text1.7891921.448239.3699Neighbours21BLASTN+432000.gbk
747857849868920112Island text2.0254622.233736.7726Neighbours21BLASTN478578.gbk
8554949*57879923851Island text4.6793231.760644.7397Neighbours344BLASTN554949.gbk
960894662904020095Island text1.8676921.968236.5635Neighbours21608946.gbk
1065600067926623267Island text2.0106321.172835.7717Neighbours21BLASTN656000.gbk
11757381*78080323423Island text1.6212719.96928.6576Neighbours21BLASTN757381.gbk
121090000*111373723738Island text4.3516925.120245.3654Neighbours21BLASTN1090000.gbk
131166009119027524267Island text2.2130123.698141.1439Neighbours21BLASTN1166009.gbk
141259236*127792218687Island text1.71721.500129.7478Neighbours21BLASTN+1259236.gbk
151309203133281723615Island text2.0634221.194131.9832Neighbours21BLASTN1309203.gbk
162295131*232283227702Island text3.1601421.197137.0295Neighbours21BLASTN+2295131.gbk
172333890*235633822449Island text2.1173921.940434.5089Neighbours21BLASTN2333890.gbk
182359046*238727828233Island text3.6356826.036346.2509Neighbours21BLASTN+2359046.gbk
192434017*245806724051Island text1.8072322.651331.301Neighbours21BLASTN+2434017.gbk
202500301*252659926299Island text3.7694231.235143.2413Neighbours21BLASTN2500301.gbk
212643203266635723155Island text2.4256223.765833.9183Neighbours21BLASTNIslandViewer 2643203.gbk