Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012791: Variovorax paradoxus S110 chromosome 1, complete genome

NCBI: NC_012791

Host Lineage: Variovorax paradoxus; Variovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Soil. Variovorax paradoxus S110 is able to grow autotrophically using hydrogen gas and carbon dioxide for energy and carbon. Variovorax paradoxus is a nutritionally diverse organism which is commonly isolated from soil. Strains of this organism are able to degrade a number of compounds such as explosives and pesticides. Variovorax paradoxus is also a plant-growth promoting organism, increasing the resistance of the plant to disease and heavy metals.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1651480*67159920120Island text1.5232118.067523.0611Neighbours11BLASTN+IslandViewer 651480.gbk
272181376114739335Island text2.1627219.562319.4401Neighbours11BLASTN+IslandViewer 721813.gbk
382137185170230332Island text2.2865124.16223.5402Neighbours11BLASTN+IslandViewer 821371.gbk
42052923208497632054Island text3.1245526.66127.3496Neighbours11BLASTN+IslandViewer 2052923.gbk
52233098225286719770Island text1.5064716.61620.4593Neighbours11BLASTN+IslandViewer 2233098.gbk
62386000240897722978Island text1.6798516.122114.8664Neighbours11BLASTN+IslandViewer 2386000.gbk
72423466*246659343128Island text1.6185118.017817.9302Neighbours11BLASTN+IslandViewer 2423466.gbk
82590500260886218363Island text1.4800717.509726.6415Neighbours11BLASTN+2590500.gbk
92622923264743824516Island text1.5437319.050324.6754Neighbours11BLASTN+2622923.gbk
102832001*286519533195Island text2.1641418.845522.4445Neighbours11BLASTN+IslandViewer 2832001.gbk
114007780*403067322894Island text1.3792716.926116.9814Neighbours11BLASTN+4007780.gbk
124079062410253023469Island text1.4632219.880830.9782Neighbours11BLASTN+IslandViewer 4079062.gbk
134680500470001919520Island text1.5239616.479214.8678Neighbours11BLASTNIslandViewer 4680500.gbk
144736084*478464848565Island text1.9706917.582521.295Neighbours11BLASTN+IslandViewer 4736084.gbk
154794362484977455413Island text1.8927517.343520.215Neighbours11BLASTNIslandViewer 4794362.gbk
165496175551738121207Island text1.7480817.477622.4388Neighbours11BLASTN5496175.gbk