Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012759: Escherichia coli BW2952 chromosome, complete genome

NCBI: NC_012759

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1144576*16459920024Island text1.6173630.290425.5561Neighbours41BLASTN+IslandViewer 144576.gbk
2461680*49742635747Island text1.9712233.537524.8228Neighbours41BLASTN+IslandViewer 461680.gbk
31093764*111859924836Island text2.5723334.362517.0614Neighbours41BLASTNIslandViewer 1093764.gbk
41296000*131880922810Island text1.6266131.567135.327Neighbours41BLASTN+IslandViewer 1296000.gbk
51409086143267323588Island text1.5209832.058631.0574Neighbours41BLASTN+IslandViewer 1409086.gbk
61462490148816925680Island text1.9726131.333722.2089Neighbours41BLASTN+IslandViewer 1462490.gbk
71517500154399826499Island text1.8144734.547722.7079Neighbours41BLASTN+IslandViewer 1517500.gbk
81920955*195809937145Island text1.5150929.722319.49Neighbours41BLASTN+IslandViewer 1920955.gbk
91983975201502731053Island text3.1986239.073424.4263Neighbours41BLASTN+IslandViewer 1983975.gbk
102069326*209441625091Island text1.6253329.672328.3226Neighbours41BLASTN+IslandViewer 2069326.gbk
112261416227972318308Island text1.5642927.714619.8867Neighbours41BLASTNIslandViewer 2261416.gbk
122342986*236716624181Island text1.9190429.704320.0563Neighbours41BLASTN+IslandViewer 2342986.gbk
132633949*268732653378Island text2.1299635.596924.7815Neighbours41BLASTN+IslandViewer 2633949.gbk
142757826278170423879Island text1.4462231.085826.1542Neighbours41BLASTN+IslandViewer 2757826.gbk
152862807289514532339Island text4.4559141.04817.0429Neighbours41BLASTN+IslandViewer 2862807.gbk
163063285308613522851Island text1.9936429.705726.9887Neighbours41BLASTN+IslandViewer 3063285.gbk
173143455316609922645Island text1.8962931.104628.8007Neighbours41BLASTN+3143455.gbk
183529657355259922943Island text1.7298830.017217.4625Neighbours41BLASTN+IslandViewer 3529657.gbk
193648500*366803719538Island text1.6204333.584628.3134Neighbours41BLASTN3648500.gbk
203675396*370289927504Island text3.4421839.516518.7322Neighbours41BLASTNIslandViewer 3675396.gbk
214132527415059918073Island text1.5462828.574926.2029Neighbours41BLASTN+IslandViewer 4132527.gbk
224247865426876220898Island text1.5455431.953221.3891Neighbours41BLASTN+4247865.gbk
234433500*445499321494Island text1.612830.927826.223Neighbours41BLASTN+IslandViewer 4433500.gbk
244467288448621818931Island text1.7788930.06925.5126Neighbours41BLASTN+IslandViewer 4467288.gbk
254501206*452437023165Island text1.7255627.748117.3834Neighbours41BLASTNIslandViewer 4501206.gbk