Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011963: Rhodobacter sphaeroides KD131 chromosome 1, complete sequence

NCBI: NC_011963

Host Lineage: Rhodobacter sphaeroides; Rhodobacter; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Halophilic, purple nonsulfur photosynthetic bacterium. Capable of producing high levels of biohydrogen (H2). Originally isolated from sea mud off the coast of DaeBu Island, South Korea. Bacteria belonging to the Rhodobacter group are metabolically versatile as they are able to grow using photosynthesis, chemosynthesis, and usually can grow under both anaerobic and aerobic conditions. The most extensively studied bacteria with regards to its photosynthetic capabilities which includes the structure, function and regulation of its photosynthetic membranes, its mechanisms of CO2 and nitrogen fixation, cytochrome diversity and its electron transport systems. It can grow aerobically and anaerobically in the light and anaerobically in the dark. It produces an intracytoplasmic membrane system consisting of membrane invaginations where the light harvesting complexes (LH1 and LH2) and the reaction center are synthesized. Furthermore, it has the ability to detoxify metal oxides and oxyanions and hence has a role in bioremediation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132580635156725762Island text1.5918314.992721.7444Neighbours11BLASTN+IslandViewer 325806.gbk
274215876533923182Island text1.5453117.329415.9672Neighbours11BLASTNIslandViewer 742158.gbk
31482042*150740225361Island text1.9059717.257212.3345Neighbours11BLASTN+IslandViewer 1482042.gbk
41979136*200018521050Island text1.5570715.216120.2428Neighbours11BLASTNIslandViewer 1979136.gbk
53073283309717923897Island text3.3764821.267625.2448Neighbours11BLASTN+3073283.gbk