Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011725: Bacillus cereus B4264 chromosome, complete genome

NCBI: NC_011725

Host Lineage: Bacillus cereus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain was isolated in 1969 from a case of fatal pneumonia in a male patient. B. cereus B4264 was cultured from the blood and the pleural fluid. This organism is a soil-dwelling opportunistic pathogen that causes food poisoning in infected individuals. The rapid onset is characterized by nausea and vomiting while the late onset is characterized by diarrhea and abdominal pain. The emetic disease is caused by a small stable dodecadepsipeptide cerulide whereas the diarrheal disease is caused by a heat labile enterotoxin. Some strains produce a potent cytotoxin that forms a pore in the membrane of eukaryotic cells and causes necrotic enteritis (death of intestinal epithelial cells) while the unique tripartite membrane lytic toxin hemolysin BL contributes to the diarrheal disease and destructive infections of the eye.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1334000*35609922100Island text3.2160828.904146.1732Neighbours21BLASTN+334000.gbk
268138769987418488Island text4.0589836.663947.0826Neighbours21BLASTN+681387.gbk
31032500*105749925000Island text1.5893623.437632.3017Neighbours21BLASTN+1032500.gbk
41055552107816922618Island text3.3684329.603344.2613Neighbours21BLASTN+1055552.gbk
51150779117502624248Island text1.883322.893435.2905Neighbours21BLASTN1150779.gbk
61182000*120593023931Island text4.8929432.933454.1527Neighbours21BLASTN+1182000.gbk
71383798140610722310Island text1.5508523.729334.4987Neighbours21BLASTN1383798.gbk
81486635150558918955Island text3.2831330.637448.0942Neighbours21BLASTN1486635.gbk
92206000222812022121Island text1.7457426.306737.1782Neighbours21BLASTN+2206000.gbk
102365647238877323127Island text2.5477622.969445.2491Neighbours21BLASTN2365647.gbk
112949519297246222944Island text1.560522.726232.4766Neighbours21BLASTN2949519.gbk
123231859*325445122593Island text1.8120721.300537.3919Neighbours21BLASTN3231859.gbk
133456240347459918360Island text1.8174924.16436.0093Neighbours21BLASTNIslandViewer 3456240.gbk
143785769*380402818260Island text1.7939322.248939.9013Neighbours21BLASTN3785769.gbk
153821789*384862226834Island text1.60323.583434.2916Neighbours21BLASTN3821789.gbk
163862094*388182919736Island text1.8172624.249134.8337Neighbours21BLASTN3862094.gbk
173897450*392424026791Island text1.6396122.25833.9201Neighbours21BLASTN3897450.gbk
183928853394759918747Island text1.7982729.227546.1803Neighbours21BLASTN3928853.gbk
194159000418057021571Island text1.8801823.224732.2451Neighbours21BLASTN4159000.gbk
204288309*431086122553Island text1.5391822.990635.8204Neighbours21BLASTN4288309.gbk
214373721*439610722387Island text1.708525.108830.5704Neighbours21BLASTN4373721.gbk
224428726*444972220997Island text1.9632324.000537.1763Neighbours21BLASTN4428726.gbk
234562709458164018932Island text1.7723925.910635.4106Neighbours21BLASTN4562709.gbk
244600000*462233422335Island text1.5595122.282336.3077Neighbours21BLASTN+4600000.gbk
254636521*465709920579Island text1.6816325.118232.8245Neighbours21BLASTN4636521.gbk
264671432*469716225731Island text1.6026924.602829.3885Neighbours21BLASTN4671432.gbk
274799905482214522241Island text1.4938323.875234.6327Neighbours21BLASTN4799905.gbk
284870223488900418782Island text1.6618924.971332.6664Neighbours344BLASTN+4870223.gbk
294944072496037416303Island text1.6140723.343332.7872Neighbours21BLASTN4944072.gbk
305043198*506679923602Island text1.8257821.935837.8792Neighbours21BLASTN+5043198.gbk
315075285*511542540141Island text1.591524.631432.8647Neighbours21BLASTN+5075285.gbk
325169135*518991820784Island text1.7763731.311550.1408Neighbours21BLASTN+5169135.gbk
335201995*525660054606Island text1.7201424.106337.264Neighbours21BLASTN+5201995.gbk