Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_011660: Listeria monocytogenes HCC23 chromosome, complete genome

NCBI: NC_011660

Host Lineage: Listeria monocytogenes; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: Listeria monocytogenes HCC23 was isolated from channel catfish. This organism, which causes listeriosis, is one of the leading causes of death from food-borne pathogens especially in pregnant women, newborns, the elderly, and immunocompromised individuals. It is found in environments such as decaying vegetable matter, sewage, water, and soil, and it can survive extremes of both temperatures (1-45 degrees C) and salt concentration marking it as an extremely dangerous food-born pathogen, especially on food that is not reheated. This organism is enteroinvasive, and utilizes an actin-based motility system by using a surface protein, ActA, that promotes actin polymerization, to spread intercellularly using the polymerized cytoskeletal protein as a "motor". There are 13 serovars associated with Listeria monocytogenes, and the serovar 4b strains are more commonly associated with invasive disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136600038823622237Island text2.0431226.841446.0681Neighbours325BLASTN+366000.gbk
2724711*74569220982Island text2.0688522.616741.1682Neighbours325BLASTN724711.gbk
31889504191517625673Island text1.5017523.616936.8072Neighbours325BLASTN1889504.gbk
42175537219812222586Island text2.9961131.408151.4184Neighbours325BLASTN2175537.gbk
52509362253223022869Island text3.0949636.946750.0587Neighbours21BLASTN+2509362.gbk
62541632*259036148730Island text2.0820526.035445.2563Neighbours21BLASTN+IslandViewer 2541632.gbk
72756860277580518946Island text2.2084524.840146.4416Neighbours325BLASTN2756860.gbk
82839201286240623206Island text1.9591625.613147.1924Neighbours314BLASTN+2839201.gbk
92924397294701522619Island text1.8265122.081734.4439Neighbours325BLASTN+2924397.gbk