Pre_GI: OUP Neighbours

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Query: NC_011660:1889504 Listeria monocytogenes HCC23 chromosome, complete genome

D: 23.6169

Host Lineage: Listeria monocytogenes; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: Listeria monocytogenes HCC23 was isolated from channel catfish. This organism, which causes listeriosis, is one of the leading causes of death from food-borne pathogens especially in pregnant women, newborns, the elderly, and immunocompromised individuals. It is found in environments such as decaying vegetable matter, sewage, water, and soil, and it can survive extremes of both temperatures (1-45 degrees C) and salt concentration marking it as an extremely dangerous food-born pathogen, especially on food that is not reheated. This organism is enteroinvasive, and utilizes an actin-based motility system by using a surface protein, ActA, that promotes actin polymerization, to spread intercellularly using the polymerized cytoskeletal protein as a "motor". There are 13 serovars associated with Listeria monocytogenes, and the serovar 4b strains are more commonly associated with invasive disease.

Number of Neighbours: 35

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_002973:1846000*Listeria monocytogenes str. 4b F2365, complete genome80.1042 %Subject ←→ Query20.0663
NC_018704:2149229*Amphibacillus xylanus NBRC 15112, complete genome77.2028 %Subject ←→ Query21.0816
NC_013766:757987Listeria monocytogenes 08-5578 chromosome, complete genome92.3407 %Subject ←→ Query21.6318
NC_016052:842762Tetragenococcus halophilus NBRC 12172, complete genome77.7696 %Subject ←→ Query21.9417
NC_013766:1202713Listeria monocytogenes 08-5578 chromosome, complete genome77.2518 %Subject ←→ Query21.9875
NC_013766:906550Listeria monocytogenes 08-5578 chromosome, complete genome77.8339 %Subject ←→ Query22.0057
NC_011660:2924397Listeria monocytogenes HCC23 chromosome, complete genome77.2273 %Subject ←→ Query22.0817
NC_003210:721824Listeria monocytogenes EGD-e, complete genome89.5772 %Subject ←→ Query22.1346
NC_013768:1983711Listeria monocytogenes 08-5923, complete genome82.0833 %Subject ←→ Query22.2499
NC_012488:453431Listeria monocytogenes Clip81459, complete genome80.1501 %Subject ←→ Query22.4617
NC_011660:724711*Listeria monocytogenes HCC23 chromosome, complete genome81.3174 %Subject ←→ Query22.6167
NC_002973:730942Listeria monocytogenes str. 4b F2365, complete genome90.6924 %Subject ←→ Query22.6302
NC_017316:2466244*Enterococcus faecalis OG1RF chromosome, complete genome77.2672 %Subject ←→ Query22.7274
NC_013766:679906Listeria monocytogenes 08-5578 chromosome, complete genome77.8431 %Subject ←→ Query23.3402
NC_012488:1159463Listeria monocytogenes Clip81459, complete genome77.307 %Subject ←→ Query23.6635
NC_013768:721897Listeria monocytogenes 08-5923, complete genome91.489 %Subject ←→ Query23.7536
NC_017316:2710021*Enterococcus faecalis OG1RF chromosome, complete genome76.6146 %Subject ←→ Query23.7547
NC_011660:2756860Listeria monocytogenes HCC23 chromosome, complete genome80.1624 %Subject ←→ Query24.8401
NC_017316:2637707Enterococcus faecalis OG1RF chromosome, complete genome77.402 %Subject ←→ Query24.8589
NC_015277:4269399Sphingobacterium sp. 21 chromosome, complete genome76.5564 %Subject ←→ Query26.7631
NC_011660:366000Listeria monocytogenes HCC23 chromosome, complete genome77.8094 %Subject ←→ Query26.8414
NC_012793:3035978Geobacillus sp. WCH70, complete genome76.6513 %Subject ←→ Query27.2556
NC_012488:732233Listeria monocytogenes Clip81459, complete genome92.4142 %Subject ←→ Query27.4501
NC_017316:2581781*Enterococcus faecalis OG1RF chromosome, complete genome75.3156 %Subject ←→ Query27.6154
NC_013768:418000Listeria monocytogenes 08-5923, complete genome82.8983 %Subject ←→ Query28.129
NC_013766:417991Listeria monocytogenes 08-5578 chromosome, complete genome82.9105 %Subject ←→ Query28.129
NC_004668:3118500Enterococcus faecalis V583, complete genome76.0999 %Subject ←→ Query28.4525
NC_016052:1818659Tetragenococcus halophilus NBRC 12172, complete genome75.3217 %Subject ←→ Query28.6557
NC_008525:108687*Pediococcus pentosaceus ATCC 25745, complete genome75.9007 %Subject ←→ Query30.0765
NC_014922:825396*Haemophilus influenzae F3047 chromosome, complete genome75.6863 %Subject ←→ Query30.1445
NC_020995:1205524Enterococcus casseliflavus EC20, complete genome75.6005 %Subject ←→ Query31.1041
NC_017316:1840462*Enterococcus faecalis OG1RF chromosome, complete genome77.1354 %Subject ←→ Query31.1734
NC_011660:2175537Listeria monocytogenes HCC23 chromosome, complete genome81.4798 %Subject ←→ Query31.4081
NC_016809:1778000Haemophilus influenzae 10810, complete genome75.3248 %Subject ←→ Query31.4851
NC_009567:904922*Haemophilus influenzae PittGG chromosome, complete genome76.057 %Subject ←→ Query33.0055