Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010994: Rhizobium etli CIAT 652, complete genome

NCBI: NC_010994

Host Lineage: Rhizobium etli; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: It is a nitrogen-fixing symbiotic bacteria that interacts with the root of the common bean plant Phaseolus vulgaris. The molecular biology and evolution of R. etli and its relation to other nitrogen/fixing symbionts has been well studied. The genomic sequence will provide information on the process of symbiosis, on the genetic systems that allow the survival and adaptations of this bacteria to the soil, and on the evolutionary relationship and the symbiosis origin of this organism.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
157362*8068223321Island text2.0827427.877136.7625Neighbours11BLASTN57362.gbk
285950087980320304Island text1.5206822.670315.2245Neighbours11BLASTNIslandViewer 859500.gbk
33477000349659919600Island text1.5450528.866727.37Neighbours11BLASTN+IslandViewer 3477000.gbk
43666651*369059923949Island text2.1286731.211740.9265Neighbours11BLASTN+3666651.gbk
54071131*409424623116Island text2.0690129.010440.7768Neighbours11BLASTN+4071131.gbk