Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_010519: Haemophilus somnus 2336 chromosome, complete genome

NCBI: NC_010519

Host Lineage: Histophilus somni; Histophilus; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: This strain was isolated from the lung of a calf which had pneumonia. A group of organisms that are either obligate parasites or commensal organisms found in animal mucous membranes. Almost all species require the presence of important growth factors found in the blood of their hosts, including either X factor (protoporphyrin IX or heme) or V factor (nicotinamide adenine dinucleotide (NAD or NADP)). This organism is a major cause of disease in feedlot cattle. It causes constriction of blood vessels supplying major organs, restricting blood supply which leads to reduced oxygen delivery, and leads to tissue damage and death. The diseases that result are pneumonia, arthritis, myocarditis (inflammation of heart muscle), and reproductive problems resulting in the loss of millions of dollars in animals each year.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1713659658825224Island text2.0328626.358143.8844Neighbours325BLASTN+71365.gbk
2275976*30217626201Island text1.653929.491145.1812Neighbours21BLASTN+275976.gbk
3416658*44239025733Island text1.8452127.241342.252Neighbours325BLASTN416658.gbk
444593646369017755Island text1.8034623.285530.43Neighbours325BLASTN445936.gbk
579622982283526607Island text2.1487425.03746.4115Neighbours325BLASTN+796229.gbk
61165418118682321406Island text1.9428826.515144.8714Neighbours325BLASTN+1165418.gbk
71411347143122219876Island text2.4527834.632948.385Neighbours325BLASTN1411347.gbk
81684901171331128411Island text2.6258425.935242.2813Neighbours21BLASTN+1684901.gbk
91764261178508320823Island text2.1369728.764245.4106Neighbours21BLASTN+1764261.gbk
101802294*182925326960Island text2.3769424.148845.977Neighbours325BLASTN+1802294.gbk
111873190190246629277Island text1.7630222.978535.6864Neighbours21BLASTN+IslandViewer 1873190.gbk
121963256199207828823Island text1.9260426.607942.6594Neighbours41BLASTN+IslandViewer 1963256.gbk
132033980*205459920620Island text1.675625.68340.3338Neighbours325BLASTN2033980.gbk