Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_010079: Staphylococcus aureus subsp. aureus USA300_TCH1516, complete

NCBI: NC_010079

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: USA300, a methicillin resistant strain of Staphylococcus aureus, has been implicated in epidemiologically unassociated outbreaks of skin and soft tissue infections among healthy individuals in at least 21 U.S. states, Canada and Europe. USA300 is also noted for its strong association with unusually invasive disease, including severe septicemia, necrotizing pneumonia and necrotizing fasciitis. Causes skin infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. S. aureus continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115441*3576920329Island text1.6560320.539131.1709Neighbours21BLASTN15441.gbk
245894048167922740Island text4.0438220.81127.4542Neighbours21BLASTNIslandViewer 458940.gbk
3575123*59845123329Island text1.554621.634630.6428Neighbours21BLASTN575123.gbk
460700062610719108Island text1.7459421.439338.1837Neighbours21BLASTN607000.gbk
51465356150892843573Island text1.7133828.633943.3485Neighbours21BLASTN+1465356.gbk
61564327160887644550Island text2.2576320.51233.4901Neighbours21BLASTN+IslandViewer 1564327.gbk
71871915*189554823634Island text1.832321.154835.7126Neighbours21BLASTN+1871915.gbk
82102856212916726312Island text2.7671721.873639.8583Neighbours21BLASTN+IslandViewer 2102856.gbk
92217767*224135723591Island text1.5238119.704533.2562Neighbours21BLASTN2217767.gbk
102352691*237059917909Island text1.6226219.078330.2047Neighbours21BLASTN+2352691.gbk
112510951252993718987Island text1.657919.28528.4627Neighbours21BLASTN+2510951.gbk
122618345263944421100Island text2.1345221.201733.3894Neighbours21BLASTN+2618345.gbk