Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009953: Salinispora arenicola CNS-205 chromosome, complete genome

NCBI: NC_009953

Host Lineage: Salinispora arenicola; Salinispora; Micromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Found in marine sediment, this organism produces cancer-fighting compounds. Salinispora strains are commonly isolated from tropical marine sediment. Members of this genus produce branched hyphae and require media which contain seawater or sodium. A survey of the cultured species identified over 90 isolates which produce compounds that inhibited cancer cells. These organisms may be a new source of bioactive chemicals for use in disease and cancer treatments. Salinispora arenicola produces the bioactive compounds staurosporine and rifamycin which may be useful in the treatment of cancer.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118800021369125692Island text1.450314.500225.1188Neighbours11BLASTN+188000.gbk
269168671567423989Island text3.139821.506528.1713Neighbours11BLASTN+IslandViewer 691686.gbk
31034809*105769322885Island text3.1087916.236914.2152Neighbours11BLASTNIslandViewer 1034809.gbk
41364500*138243317934Island text1.6033214.980514.9455Neighbours11BLASTNIslandViewer 1364500.gbk
51411245144849437250Island text1.6700412.667223.2428Neighbours11BLASTN1411245.gbk
61484000150245618457Island text1.6495318.402230.9524Neighbours11BLASTNIslandViewer 1484000.gbk
71581088160415923072Island text1.7070712.994515.8546Neighbours11BLASTN+1581088.gbk
81799416182011720702Island text1.467717.430727.8779Neighbours11BLASTNIslandViewer 1799416.gbk
91831000184859917600Island text1.8789314.299616.9689Neighbours11BLASTNIslandViewer 1831000.gbk
101936463195449418032Island text1.5092913.022914.9166Neighbours11BLASTN+1936463.gbk
112106572212645619885Island text1.506713.366412.6812Neighbours11BLASTNIslandViewer 2106572.gbk
122281349230009918751Island text1.8805413.317719.2776Neighbours11BLASTN+IslandViewer 2281349.gbk
132302337232341021074Island text2.5735122.446532.2621Neighbours11BLASTNIslandViewer 2302337.gbk
142342500236065118152Island text1.7435914.08077.34255Neighbours11BLASTNIslandViewer 2342500.gbk
152388605241258023976Island text2.2873514.334925.137Neighbours11BLASTN2388605.gbk
162727669275518827520Island text1.7172714.506316.4088Neighbours11BLASTN2727669.gbk
172808288283404325756Island text1.7622613.098924.729Neighbours11BLASTN+IslandViewer 2808288.gbk
182867864289362825765Island text1.8364919.238731.2293Neighbours11BLASTN2867864.gbk
193224412324701122600Island text1.9504514.863818.5837Neighbours11BLASTN+IslandViewer 3224412.gbk
203316782*333801821237Island text1.6773918.526632.6928Neighbours11BLASTN+IslandViewer 3316782.gbk
213385428340678421357Island text1.6326514.843417.6561Neighbours11BLASTN+IslandViewer 3385428.gbk
223426344344718020837Island text1.5701413.926415.9897Neighbours11BLASTN+IslandViewer 3426344.gbk
233509229353881729589Island text1.585413.682917.3925Neighbours11BLASTN+IslandViewer 3509229.gbk
243552738*357643823701Island text2.0363913.538820.4806Neighbours11BLASTN+3552738.gbk
253611177364144430268Island text2.2709116.683123.2248Neighbours11BLASTNIslandViewer 3611177.gbk
263852436387445922024Island text1.6174915.031917.3706Neighbours11BLASTN3852436.gbk
274240000425984419845Island text1.5351317.484431.8624Neighbours11BLASTN+IslandViewer 4240000.gbk
284748147477159923453Island text1.5688915.310123.6009Neighbours11BLASTN+IslandViewer 4748147.gbk
294942500496309920600Island text1.6456513.754514.461Neighbours114942500.gbk
305193471521843324963Island text3.1992720.461528.3633Neighbours11BLASTN+5193471.gbk
315453698548744633749Island text2.4824815.975321.517Neighbours11BLASTN5453698.gbk
325733211*575609922889Island text1.5835314.929616.6246Neighbours11BLASTN5733211.gbk