Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009654: Marinomonas sp. MWYL1, complete genome

NCBI: NC_009654

Host Lineage: Marinomonas; Marinomonas; Oceanospirillaceae; Oceanospirillales; Proteobacteria; Bacteria

General Information: Marinomonas MWYL1 was isolated from the root surface of the salt marsh grass Spartina anglica, growing near the North Norfolk, England village of Stiffkey. The genus Marinomonas comprises a widespread group of g -proteobacteria that exist in coastal waters, and which had been earlier been included in the genus Alteromonas. The interest in Marinomonas MWYL 1 was that it could grow on the betaine molecule Dimethylsulphoniopropionate (DMSP) as sole carbon source and, when it did do, it released large amounts of the gas dimethyl sulphide. DMSP is a compatible solute that is used by many marine phytoplankton and seaweed macroalgae as an osmoticum and an anti-stress compound. In addition, a few known land angiosperms make DMSP and these include certain species of Spartina - hence the choice of these plants as a source for DMSP-degrading bacteria. Indeed, others had shown previously that the DMSP-catabolising bacteria isolated from Spartina root surfaces included Marinomonas strains.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
191096*11438823293Island text1.5195630.222547.588Neighbours21BLASTN+91096.gbk
230400032886524866Island text1.7480234.925830.761Neighbours21BLASTN+IslandViewer 304000.gbk
3615504*63706021557Island text1.8351431.825849.6102Neighbours42BLASTN+615504.gbk
4866124*89071424591Island text1.5509331.231845.2857Neighbours21BLASTN866124.gbk
589449291290618415Island text2.0814228.720851.6263Neighbours21BLASTN+894492.gbk
61123709*114240218694Island text1.7009729.989547.5362Neighbours21BLASTN+1123709.gbk
71729159*175248223324Island text2.0110630.359356.0665Neighbours21BLASTN+1729159.gbk
82309365*232872719363Island text1.4798930.33847.9352Neighbours21BLASTN+2309365.gbk
92895455291862123167Island text1.5063237.061344.8137BLASTNIslandViewer 2895455.gbk
102940278295966519388Island text1.7161529.614550.1523Neighbours21BLASTN+2940278.gbk
112958316*298838530070Island text1.7329331.484553.0747Neighbours21BLASTN2958316.gbk
123215205*324567930475Island text1.6530430.145548.9855Neighbours21BLASTNIslandViewer 3215205.gbk
133316458*333475618299Island text2.2195832.152852.9571Neighbours21BLASTN3316458.gbk
143849774*388986740094Island text2.171230.305252.1524Neighbours21BLASTN3849774.gbk
153980289400011919831Island text1.7661229.87949.8477BLASTN+3980289.gbk
164253431*427667923249Island text1.8257329.924648.1727Neighbours21BLASTNIslandViewer 4253431.gbk
174624459464425719799Island text1.7002930.499151.1958Neighbours42BLASTN+4624459.gbk
184716417475275236336Island text1.5639232.610338.3682Neighbours42BLASTN+4716417.gbk