Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_009488: Orientia tsutsugamushi str. Boryong, complete genome

NCBI: NC_009488

Host Lineage: Orientia tsutsugamushi; Orientia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain was isolated from a human in 1995 in Boryong, Korea. Causal agent of scrub typhus. This organism is the causative agent of scrub typhus, and like other members of the Rickettsiales is an obligate intracellular organism. Scrub typhus, which occurs in rural and agricultural areas, is one of the most common infectious diseases in southeast Asia where an estimated 1 million cases occur each year. Many cases are mild, but if left untreated, a variety of serious illnesses can arise and fatality rates can range from 1-35%. Transmission occurs via an insect vector through the bite of the larval trombiculid mite (chiggers). The bacterium is transmitted transovarially in mites (from females to their offspring).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1578898312525237Island text1.6039316.487422.1432Neighbours21BLASTN+IslandViewer 57889.gbk
28984411427824435Island text1.5143616.31220.8247Neighbours21BLASTN+89844.gbk
3186000*23526749268Island text1.9022618.220930.6572Neighbours21BLASTN+186000.gbk
4327285*35717829894Island text1.9180116.299524.2772Neighbours21BLASTN+327285.gbk
560562562644220818Island text1.5193117.45520.9892Neighbours21BLASTN+605625.gbk
668100070468323684Island text1.7889117.610725.3155Neighbours21BLASTN681000.gbk
776752579085623332Island text2.4629213.858825.5147Neighbours21BLASTN767525.gbk
880387382636322491Island text1.5459815.998322.5837Neighbours21BLASTN+803873.gbk
985450087734922850Island text1.7326415.624523.9931Neighbours21BLASTN854500.gbk
10903000*92113618137Island text1.5471814.978520.4501Neighbours21BLASTN+903000.gbk
1195665098456827919Island text1.5392416.879222.967Neighbours21BLASTN956650.gbk
121059147108037321227Island text1.5556616.779821.4435Neighbours21BLASTN+1059147.gbk
131126000114709921100Island text1.5919316.768825.9494Neighbours21BLASTN+1126000.gbk
141165927118823722311Island text1.5284514.871123.0418Neighbours21BLASTN+1165927.gbk
151249492127365024159Island text1.7422616.944324.9871Neighbours21BLASTN+1249492.gbk
161391975141239220418Island text1.4745115.995922.3109Neighbours21BLASTN+1391975.gbk
171430693146466333971Island text1.5637816.28321.9649Neighbours21BLASTN+1430693.gbk
181465781148423618456Island text1.6766315.24423.4164Neighbours21BLASTN+1465781.gbk
191673756169228518530Island text1.5029215.819619.6126Neighbours21BLASTN+1673756.gbk
201795870182266926800Island text1.5535917.406424.0833Neighbours21BLASTNIslandViewer 1795870.gbk
211871912*190121429303Island text1.7640717.514127.4235Neighbours21BLASTN+1871912.gbk
221917000194010923110Island text1.598116.982826.3106Neighbours21BLASTN+1917000.gbk
231952640197373621097Island text1.6021916.23322.9707Neighbours21BLASTN+1952640.gbk
241992645201309920455Island text1.5198117.315220.7516Neighbours21BLASTN+1992645.gbk
252037634206409926466Island text2.76814.570226.8729Neighbours21BLASTN2037634.gbk