Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009457: Vibrio cholerae O395 chromosome 2, complete sequence

NCBI: NC_009457

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Aquatic organism that causes Cholera. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135151241309961588Island text1.5476132.832348.4301Neighbours21BLASTN+IslandViewer 351512.gbk
247133749264521309Island text4.1246441.642620.5529Neighbours21BLASTN471337.gbk
31068000108559917600Island text1.535331.597444.095Neighbours41BLASTN+IslandViewer 1068000.gbk
41444449*150561961171Island text1.7437131.39926.1359Neighbours21BLASTN+IslandViewer 1444449.gbk
52095366*211633320968Island text1.5681933.649227.873Neighbours44BLASTNIslandViewer 2095366.gbk
62764972280178836817Island text1.78531.850431.7822Neighbours21BLASTN+IslandViewer 2764972.gbk