Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_009434: Pseudomonas stutzeri A1501, complete genome

NCBI: NC_009434

Host Lineage: Pseudomonas stutzeri; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain (A1501; CGMCC 0351) was isolated from rice roots that had been inoculated with strain A15 in a rice paddy in China. It is considered wild-type and has been studied for the nitrogen-fixation process and is used as an inoculant during rice cultivation. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas stutzeri is a nonfluorescent denitrifying bacterium widely distributed in the environment.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128147430109919626Island text1.5234819.884925.7705Neighbours11BLASTN+281474.gbk
260876568209973335Island text2.2572325.409223.6608Neighbours11BLASTN+IslandViewer 608765.gbk
369558276739471813Island text1.9640722.4627.0578Neighbours11BLASTN+IslandViewer 695582.gbk
4796878*82874331866Island text2.0293324.228928.5286Neighbours11BLASTN+IslandViewer 796878.gbk
51068281*109060022320Island text1.9794622.725133.6216Neighbours11BLASTN1068281.gbk
61156834*117518418351Island text1.5366519.671122.9382Neighbours11BLASTN+IslandViewer 1156834.gbk
71580205*160112420920Island text1.75920.42524.2173Neighbours11BLASTN+IslandViewer 1580205.gbk
81743696176409920404Island text1.5884220.223736.425Neighbours11BLASTNIslandViewer 1743696.gbk
92006500203099424495Island text2.0472122.895921.4795Neighbours11BLASTN+2006500.gbk
102577717*259643418718Island text1.6287519.43725.4538Neighbours11BLASTN2577717.gbk
113413461*343258419124Island text1.6767121.011724.0427Neighbours11BLASTN3413461.gbk
123434381*346411529735Island text2.1240527.533631.4698Neighbours11BLASTN+IslandViewer 3434381.gbk
133611738*3748875137138Island text2.0594923.339124.6435Neighbours11BLASTN+IslandViewer 3611738.gbk
144140362416039720036Island text1.8714719.864135.9138Neighbours11BLASTN+4140362.gbk