Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008609: Pelobacter propionicus DSM 2379, complete genome

NCBI: NC_008609

Host Lineage: Pelobacter propionicus; Pelobacter; Pelobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Common environmental anaerobe. The genus Pelobacter encompasses a unique group of fermentative microorganisms in the delta-proteobacteria. This species is ubiquitous in both marine and fresh water, and in anaerobic sedmiments. It is able to convert the unsaturated hydrocarbon acetylene to to acetate and ethanol via acetylaldehyde as an intermediate. These microorganisms may survive in some sediments as an Fe(III) or elemental sulfur reducer as well as growing fermentatively as an ethanol-oxidizing acetogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1112340*13168719348Island text2.2642438.483724.9117Neighbours33BLASTN+IslandViewer 112340.gbk
2142471*18623243762Island text2.2265538.045729.9058Neighbours11BLASTN+IslandViewer 142471.gbk
320631324672140409Island text2.6741142.324334.3466Neighbours11BLASTN+206313.gbk
425160828892937322Island text3.3544348.280121.0887Neighbours33BLASTN+IslandViewer 251608.gbk
5708886*74019331308Island text2.0244534.408440.8089Neighbours364BLASTN708886.gbk
697586799879422928Island text2.2288332.508542.1915Neighbours11BLASTN+975867.gbk
71027838106708739250Island text3.8878149.764435.6818Neighbours33BLASTN+1027838.gbk
81394377*141539521019Island text2.8868636.758339.2026Neighbours11BLASTN+1394377.gbk
91976403*207096194559Island text3.2410546.177327.8283Neighbours11BLASTN+IslandViewer 1976403.gbk
102254392227958425193Island text3.1755545.789235.0878Neighbours33BLASTN+2254392.gbk
112446246*249438248137Island text3.1549448.806525.2264Neighbours11BLASTN+IslandViewer 2446246.gbk
122518993254286723875Island text1.6870335.235331.8736Neighbours11BLASTN2518993.gbk
132565161259077625616Island text1.8353742.767733.8592Neighbours33BLASTN+IslandViewer 2565161.gbk
142643000267509932100Island text4.3311450.67941.57Neighbours33BLASTN2643000.gbk
152787274281055923286Island text2.6743636.630643.2209Neighbours11BLASTN+2787274.gbk
162840249*286388423636Island text2.2024537.418723.8179Neighbours11BLASTN+2840249.gbk
172933468295611322646Island text2.0246134.903926.3004Neighbours33BLASTN2933468.gbk
183011059303502123963Island text1.9632232.617931.3802Neighbours11BLASTN+3011059.gbk
193119502314911129610Island text3.7324450.872825.9831Neighbours33BLASTN+IslandViewer 3119502.gbk
203672653370509932447Island text3.4861950.362229.5011Neighbours33BLASTN3672653.gbk
213732192*377050638315Island text3.7311554.087626.4827Neighbours11BLASTN+3732192.gbk
223921113395241031298Island text3.8447250.214924.933Neighbours11BLASTN+3921113.gbk