Pre_GI: SEQWORD Parameters

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




Query: NC_008609:3732192 Pelobacter propionicus DSM 2379, complete genome

Host Lineage: Pelobacter propionicus; Pelobacter; Pelobacteraceae; Desulfuromonadales; Proteobacteria; Bacteria

General Information: Common environmental anaerobe. The genus Pelobacter encompasses a unique group of fermentative microorganisms in the delta-proteobacteria. This species is ubiquitous in both marine and fresh water, and in anaerobic sedmiments. It is able to convert the unsaturated hydrocarbon acetylene to to acetate and ethanol via acetylaldehyde as an intermediate. These microorganisms may survive in some sediments as an Fe(III) or elemental sulfur reducer as well as growing fermentatively as an ethanol-oxidizing acetogen.



Query D = 54.0876

Lower LimitUpper Limit



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

IslandHost DescriptionDNeighboursBLASTN
NC_014306:4106569*Erwinia billingiae Eb661, complete genome49.1199NeighboursBLASTN
NC_013716:1298932Citrobacter rodentium ICC168, complete genome49.2638NeighboursBLASTN
NC_006856:95830Salmonella enterica subsp. enterica serovar Choleraesuis str49.3906NeighboursBLASTN
NC_015501:1941851*Porphyromonas asaccharolytica DSM 20707 chromosome, complete49.4604NeighboursBLASTN
NC_009092:179226*Shewanella loihica PV-4, complete genome49.4822NeighboursBLASTN
NC_014618:1103239Enterobacter cloacae SCF1 chromosome, complete genome49.4906NeighboursBLASTN
NC_013173:133466Desulfomicrobium baculatum DSM 4028, complete genome49.5268NeighboursBLASTN
NC_008570:3220539*Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome49.5623NeighboursBLASTN
NC_011283:1901229*Klebsiella pneumoniae 342 chromosome, complete genome49.5744NeighboursBLASTN
NC_013716:2255102Citrobacter rodentium ICC168, complete genome49.6125NeighboursBLASTN
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome49.6231NeighboursBLASTN
NC_009464:931647Uncultured methanogenic archaeon RC-I, complete genome49.6416NeighboursBLASTN
NC_020064:3998715*Serratia marcescens FGI94, complete genome49.6448NeighboursBLASTN
NC_014828:637523Ethanoligenens harbinense YUAN-3 chromosome, complete genome49.7096NeighboursBLASTN
NC_013222:817686*Robiginitalea biformata HTCC2501, complete genome49.7242NeighboursBLASTN
NC_014618:4657719Enterobacter cloacae SCF1 chromosome, complete genome49.7421NeighboursBLASTN
NC_008609:1027838Pelobacter propionicus DSM 2379, complete genome49.7644NeighboursBLASTN
NC_013850:4829455*Klebsiella variicola At-22 chromosome, complete genome49.7834NeighboursBLASTN
NC_010337:98974*Heliobacterium modesticaldum Ice1, complete genome49.7889NeighboursBLASTN
NC_009464:650997*Uncultured methanogenic archaeon RC-I, complete genome49.8286NeighboursBLASTN
NC_016816:1912366*Pantoea ananatis LMG 5342, complete genome49.9044NeighboursBLASTN
NC_008700:2701500*Shewanella amazonensis SB2B, complete genome49.9286NeighboursBLASTN
NC_010655:373437Akkermansia muciniphila ATCC BAA-835, complete genome49.9389NeighboursBLASTN
NC_013173:1356526*Desulfomicrobium baculatum DSM 4028, complete genome49.9427NeighboursBLASTN
NC_018691:1822731Alcanivorax dieselolei B5 chromosome, complete genome49.9461NeighboursBLASTN
NC_007516:193498*Synechococcus sp. CC9605, complete genome50.0753NeighboursBLASTN
NC_013406:2866000*Paenibacillus sp. Y412MC10 chromosome, complete genome50.1139NeighboursBLASTN
NC_011831:1610346Chloroflexus aggregans DSM 9485, complete genome50.1181
NC_013665:1123943Methanocella paludicola SANAE, complete genome50.1455NeighboursBLASTN
NC_010337:2793667*Heliobacterium modesticaldum Ice1, complete genome50.1502NeighboursBLASTN
NC_008609:3921113Pelobacter propionicus DSM 2379, complete genome50.2149NeighboursBLASTN
NC_015061:1902251Rahnella sp. Y9602 chromosome, complete genome50.2801NeighboursBLASTN
NC_009973:77518Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, complete50.353Neighbours
NC_008609:3672653Pelobacter propionicus DSM 2379, complete genome50.3622NeighboursBLASTN
NC_019968:1387352Prevotella dentalis DSM 3688 chromosome 2, complete sequence50.3903BLASTN
NC_013173:953633*Desulfomicrobium baculatum DSM 4028, complete genome50.4175NeighboursBLASTN
NC_013508:1491945*Edwardsiella tarda EIB202, complete genome50.42NeighboursBLASTN
NC_007516:1618033Synechococcus sp. CC9605, complete genome50.4569NeighboursBLASTN
NC_011832:366092Candidatus Methanosphaerula palustris E1-9c, complete genome50.4803NeighboursBLASTN
NC_019960:1126000Prevotella dentalis DSM 3688 chromosome 1, complete sequence50.4959BLASTN
NC_007516:2277910*Synechococcus sp. CC9605, complete genome50.5095NeighboursBLASTN
NC_018515:1354511Desulfosporosinus meridiei DSM 13257 chromosome, complete genome50.5135NeighboursBLASTN
NC_009092:1599526Shewanella loihica PV-4, complete genome50.5468NeighboursBLASTN
NC_021066:3703725*Raoultella ornithinolytica B6, complete genome50.563NeighboursBLASTN
NC_019960:1658657*Prevotella dentalis DSM 3688 chromosome 1, complete sequence50.6039BLASTN
NC_002932:1798869*Chlorobium tepidum TLS, complete genome50.6144NeighboursBLASTN
NC_014121:1589389*Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete50.627NeighboursBLASTN
NC_008609:2643000Pelobacter propionicus DSM 2379, complete genome50.679NeighboursBLASTN
NC_010501:908000Pseudomonas putida W619, complete genome50.7357NeighboursBLASTN
NC_014618:690056*Enterobacter cloacae SCF1 chromosome, complete genome50.7621NeighboursBLASTN
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome50.7802NeighboursBLASTN
NC_013282:2827757Cronobacter turicensis, complete genome50.8159NeighboursBLASTN
NC_019960:1524338Prevotella dentalis DSM 3688 chromosome 1, complete sequence50.8352BLASTN
NC_005070:617448Synechococcus sp. WH 8102, complete genome50.8478NeighboursBLASTN
NC_014643:1251847*Rothia dentocariosa ATCC 17931 chromosome, complete genome50.8673BLASTN
NC_008609:3119502Pelobacter propionicus DSM 2379, complete genome50.8728NeighboursBLASTN
NC_009481:82767Synechococcus sp. WH 7803 chromosome, complete genome50.978NeighboursBLASTN
NC_015690:6521740*Paenibacillus mucilaginosus KNP414 chromosome, complete genome51.0614NeighboursBLASTN
NC_013592:4511478Dickeya dadantii Ech586, complete genome51.0662NeighboursBLASTN
NC_019968:891904Prevotella dentalis DSM 3688 chromosome 2, complete sequence51.1746BLASTN
NC_016818:2927500Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete51.222NeighboursBLASTN
NC_016935:2503071*Paenibacillus mucilaginosus 3016 chromosome, complete genome51.3051NeighboursBLASTN
NC_020054:4161049*Fibrella aestuarina BUZ 2 drat genome51.3251BLASTN
NC_003228:2010643Bacteroides fragilis NCTC 9343, complete genome51.3542NeighboursBLASTN
NC_014541:1165991Ferrimonas balearica DSM 9799 chromosome, complete genome51.4043NeighboursBLASTN
NC_019968:1147409*Prevotella dentalis DSM 3688 chromosome 2, complete sequence51.4094NeighboursBLASTN
NC_016885:2294000*Pyrobaculum oguniense TE7 chromosome, complete genome51.4358NeighboursBLASTN
NC_016051:1681076*Thermococcus sp. AM4 chromosome, complete genome51.499NeighboursBLASTN
NC_012912:3853377*Dickeya zeae Ech1591, complete genome51.5692NeighboursBLASTN
NC_015690:6595395Paenibacillus mucilaginosus KNP414 chromosome, complete genome51.6249NeighboursBLASTN
NC_017047:4037674Rahnella aquatilis HX2 chromosome, complete genome51.6377NeighboursBLASTN
NC_008570:4594436*Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome51.6501NeighboursBLASTN
NC_015690:7785875Paenibacillus mucilaginosus KNP414 chromosome, complete genome51.7482NeighboursBLASTN
NC_009792:3665369Citrobacter koseri ATCC BAA-895, complete genome51.8195NeighboursBLASTN
NC_009464:2523092Uncultured methanogenic archaeon RC-I, complete genome51.8602NeighboursBLASTN
NC_016051:1803880*Thermococcus sp. AM4 chromosome, complete genome51.9758NeighboursBLASTN
NC_014618:2139639*Enterobacter cloacae SCF1 chromosome, complete genome52.1392NeighboursBLASTN
NC_012796:3267569*Desulfovibrio magneticus RS-1, complete genome52.6121NeighboursBLASTN
NC_015963:117178Enterobacter asburiae LF7a plasmid pENTAS01, complete sequence52.6759NeighboursBLASTN
NC_015501:1762450Porphyromonas asaccharolytica DSM 20707 chromosome, complete52.7445NeighboursBLASTN
NC_012796:2757500Desulfovibrio magneticus RS-1, complete genome52.8173Neighbours
NC_014935:1704816Nitratifractor saLSUginis DSM 16511 chromosome, complete genome52.884NeighboursBLASTN
NC_019960:1198067*Prevotella dentalis DSM 3688 chromosome 1, complete sequence52.9228BLASTN
NC_015424:1689500Aeromonas veronii B565 chromosome, complete genome53.0358NeighboursBLASTN
NC_009348:1475955Aeromonas salmonicida subsp. salmonicida A449, complete genome53.1411NeighboursBLASTN
NC_009483:2086021Geobacter uraniireducens Rf4 chromosome, complete genome53.1981NeighboursBLASTN
NC_019968:382991*Prevotella dentalis DSM 3688 chromosome 2, complete sequence53.2135NeighboursBLASTN
NC_010410:3606826Acinetobacter baumannii AYE, complete genome53.266NeighboursBLASTN
NC_020211:2206500Serratia marcescens WW4, complete genome53.4692NeighboursBLASTN
NC_012796:1645856*Desulfovibrio magneticus RS-1, complete genome53.6076NeighboursBLASTN
NC_017098:1542284*Spirochaeta africana DSM 8902 chromosome, complete genome53.6594NeighboursBLASTN
NC_016816:3333000Pantoea ananatis LMG 5342, complete genome53.7123NeighboursBLASTN
NC_011283:4966471Klebsiella pneumoniae 342 chromosome, complete genome53.735NeighboursBLASTN
NC_013665:2132000Methanocella paludicola SANAE, complete genome53.7697NeighboursBLASTN
NC_009464:379377Uncultured methanogenic archaeon RC-I, complete genome53.8095NeighboursBLASTN
NC_020054:1666263*Fibrella aestuarina BUZ 2 drat genome53.828BLASTN
NC_013850:1658010Klebsiella variicola At-22 chromosome, complete genome53.863NeighboursBLASTN
NC_009838:81913*Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence53.9447NeighboursBLASTN
NC_019968:8397*Prevotella dentalis DSM 3688 chromosome 2, complete sequence53.9678BLASTN
NC_008609:3732192*Pelobacter propionicus DSM 2379, complete genome54.0876NeighboursBLASTN
NC_019897:2908971*Thermobacillus composti KWC4 chromosome, complete genome54.139NeighboursBLASTN
NC_012918:3203136Geobacter sp. M21 chromosome, complete genome54.1503NeighboursBLASTN
NC_015315:1Thermoproteus uzoniensis 768-20 chromosome, complete genome54.1852NeighboursBLASTN
NC_007951:570500*Burkholderia xenovorans LB400 chromosome 1, complete sequence54.2081NeighboursBLASTN
NC_012880:3421500*Dickeya dadantii Ech703, complete genome54.2571NeighboursBLASTN
NC_012660:1804610*Pseudomonas fluorescens SBW25 chromosome, complete genome54.2743NeighboursBLASTN
NC_007517:1468719*Geobacter metallireducens GS-15, complete genome54.2759NeighboursBLASTN
NC_017047:3174588Rahnella aquatilis HX2 chromosome, complete genome54.3115NeighboursBLASTN
NC_016645:1677703Pyrobaculum sp. 1860 chromosome, complete genome54.3781BLASTN
NC_019968:1235500Prevotella dentalis DSM 3688 chromosome 2, complete sequence54.3913NeighboursBLASTN
NC_009464:1479174Uncultured methanogenic archaeon RC-I, complete genome54.4617NeighboursBLASTN
NC_007516:124486*Synechococcus sp. CC9605, complete genome54.9261NeighboursBLASTN
NC_013665:1766158*Methanocella paludicola SANAE, complete genome54.9745NeighboursBLASTN
NC_019968:552440Prevotella dentalis DSM 3688 chromosome 2, complete sequence55.1362BLASTN
NC_007516:774489*Synechococcus sp. CC9605, complete genome55.3327NeighboursBLASTN
NC_009464:2687445Uncultured methanogenic archaeon RC-I, complete genome55.4602NeighboursBLASTN
NC_012796:77071*Desulfovibrio magneticus RS-1, complete genome55.8173NeighboursBLASTN
NC_016885:1784000Pyrobaculum oguniense TE7 chromosome, complete genome55.8536BLASTN
NC_012969:2136243*Methylovorus glucosetrophus SIP3-4 chromosome, complete genome56.0629NeighboursBLASTN
NC_012796:4075583*Desulfovibrio magneticus RS-1, complete genome56.2196NeighboursBLASTN
NC_014562:2563466*Pantoea vagans C9-1 chromosome, complete genome56.2301NeighboursBLASTN
NC_019968:1084288*Prevotella dentalis DSM 3688 chromosome 2, complete sequence56.3063NeighboursBLASTN
NC_020054:6111419Fibrella aestuarina BUZ 2 drat genome56.5052NeighboursBLASTN
NC_012918:1814000*Geobacter sp. M21 chromosome, complete genome56.5214NeighboursBLASTN
NC_013665:1922000Methanocella paludicola SANAE, complete genome56.7527NeighboursBLASTN
NC_005070:904751*Synechococcus sp. WH 8102, complete genome57.149BLASTN
NC_019968:175480*Prevotella dentalis DSM 3688 chromosome 2, complete sequence57.3734BLASTN
NC_011365:592256*Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genome57.3988BLASTN
NC_005070:2374850*Synechococcus sp. WH 8102, complete genome57.4346NeighboursBLASTN
NC_016935:1365463*Paenibacillus mucilaginosus 3016 chromosome, complete genome58.1217NeighboursBLASTN
NC_010506:602000Shewanella woodyi ATCC 51908, complete genome58.2077
NC_007513:75197*Synechococcus sp. CC9902, complete genome58.3342NeighboursBLASTN
NC_012796:1049034*Desulfovibrio magneticus RS-1, complete genome58.3343NeighboursBLASTN
NC_019968:1304450*Prevotella dentalis DSM 3688 chromosome 2, complete sequence58.5325NeighboursBLASTN
NC_009778:2227627*Enterobacter sakazakii ATCC BAA-894, complete genome58.5615BLASTN
NC_015690:632565*Paenibacillus mucilaginosus KNP414 chromosome, complete genome58.9304NeighboursBLASTN
NC_019968:1194489*Prevotella dentalis DSM 3688 chromosome 2, complete sequence59.0569NeighboursBLASTN