Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008343: Granulibacter bethesdensis CGDNIH1, complete genome

NCBI: NC_008343

Host Lineage: Granulibacter bethesdensis; Granulibacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Isolated from a patient with fever and lymphadenitis. Chronic granulomatous disease (CGD) is a rare inherited disease of the phagocyte NADPH oxidase system causing defective production of toxic oxygen metabolites, impaired bacterial and fungal killing, and recurrent life-threatening infections. This species was isolated from a 39 year old man with CGD and was shown to be the causal agent of the disease by classical methods. The isolation of this organism is the first known case of a bacterium from the Acetobacteraceae family to be the cause of an invasive human disease.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
161191*7956018370Island text1.5045532.794334.3525Neighbours11BLASTN+61191.gbk
288184*11285024667Island text1.493229.65131.2949Neighbours11BLASTN+IslandViewer 88184.gbk
3823093*85175828666Island text1.848528.969139.7115Neighbours11BLASTN+823093.gbk
41250869*127359922731Island text1.6995734.31223.647Neighbours511BLASTNIslandViewer 1250869.gbk
51470360*149541825059Island text1.879535.257628.7383Neighbours11BLASTN+IslandViewer 1470360.gbk
61548020*157986331844Island text1.6982644.91834.9188Neighbours511BLASTN+IslandViewer 1548020.gbk
71631780165385622077Island text1.5694532.931538.6144Neighbours511BLASTN1631780.gbk
81699132172474825617Island text1.7780135.370331.4405Neighbours11BLASTN+IslandViewer 1699132.gbk
91743500176831524816Island text2.0288641.939825.7486Neighbours11+IslandViewer 1743500.gbk
101870000188760817609Island text1.4850234.770246.59521870000.gbk
112020785*204163920855Island text1.6294129.179836.0143Neighbours11BLASTN+IslandViewer 2020785.gbk
122050000207522725228Island text1.607533.043524.3984Neighbours11BLASTN+2050000.gbk
132389710241521725508Island text1.7430334.007942.058Neighbours11BLASTNIslandViewer 2389710.gbk
142589680*261333023651Island text1.7614627.624841.1034Neighbours11BLASTN2589680.gbk