Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007086: Xanthomonas campestris pv. campestris str. 8004, complete genome

NCBI: NC_007086

Host Lineage: Xanthomonas campestris; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: The original was isolated from an inflected cauliflower in Sussex, United Kingdom, in 1958. Strain 8004 is a spontaneous rifampicin resistant strain. Causes black rot disease in crucifers. These organisms are almost exclusively found associated with their plant hosts and are not found free in the soil. This species is a major cause of black rot in crucifers, a disease that results in massive tissue degeneration. It also produces an extracellular polysaccharide known as xanthan, which is harvested commercially as a food stabilizing agent for use in industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1714939265021158Island text1.8897922.273226.7283Neighbours11BLASTNIslandViewer 71493.gbk
215522318149426272Island text1.8814623.504423.9432Neighbours11BLASTN+IslandViewer 155223.gbk
339672342172325001Island text2.0860727.392839.0072Neighbours11BLASTN+IslandViewer 396723.gbk
4459934*48362323690Island text1.6360220.461515.751Neighbours11BLASTN+IslandViewer 459934.gbk
5557789*58514427356Island text1.9752725.93124.0689Neighbours11BLASTN557789.gbk
662689165055223662Island text1.5660725.358721.7322Neighbours11BLASTNIslandViewer 626891.gbk
71032107105609923993Island text1.900521.469924.9385Neighbours11BLASTN+IslandViewer 1032107.gbk
81224867*128273457868Island text2.5424125.996120.69Neighbours11BLASTN+IslandViewer 1224867.gbk
91457531148076223232Island text1.4740519.20629.4494Neighbours11BLASTN+IslandViewer 1457531.gbk
101936505197809941595Island text2.4697726.240627.7716Neighbours11BLASTN+IslandViewer 1936505.gbk
111988000*201548327484Island text1.4609123.285537.7573Neighbours11BLASTN1988000.gbk
122408837*243103522199Island text1.8501621.816721.6252Neighbours11BLASTN+IslandViewer 2408837.gbk
132477040251517738138Island text2.8530.468623.4316Neighbours11BLASTN+IslandViewer 2477040.gbk
142887875*297116283288Island text2.3535830.857225.043Neighbours11BLASTN+IslandViewer 2887875.gbk
153118116315441436299Island text1.7937522.298319.8973Neighbours11BLASTN+IslandViewer 3118116.gbk
163334000335229818299Island text1.5101219.710619.302Neighbours11BLASTN+IslandViewer 3334000.gbk
173582500360369821199Island text1.7605121.004616.5282Neighbours11BLASTN+IslandViewer PAI DB3582500.gbk
183805390382691521526Island text1.6095323.062131.0239Neighbours11BLASTNIslandViewer 3805390.gbk
194293405431133917935Island text1.6105818.503825.1858Neighbours11BLASTN+IslandViewer 4293405.gbk
204489153*450718918037Island text1.8173819.725817.4199Neighbours11BLASTN+IslandViewer 4489153.gbk
214610819463110920291Island text2.0904220.853424.3028Neighbours11BLASTN+IslandViewer 4610819.gbk
225064053508925125199Island text2.0651823.151319.0912Neighbours11BLASTN+IslandViewer 5064053.gbk