Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003552: Methanosarcina acetivorans C2A, complete genome

NCBI: NC_003552

Host Lineage: Methanosarcina acetivorans; Methanosarcina; Methanosarcinaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: This wild-type strain (C2A; DSM2834) is the type strain of this species and was isolated from marine sediment. Anaerobic methane-producing archeon. This organism is a strictly anaerobic, nonmotile, methane-producing Archaea responsible for virtually all biogenic methane production, a process of critical importance as a key step in the global carbon cycle. This process results in the production of significant amounts of greenhouse gas. This organism is also important in production of alternative fuels and plays a role in both agricultural and waste treatment industry. Optimal growth occurs at pH 6.5-7.0.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
148400050609922100Island text2.1131828.906224.059Neighbours21BLASTNIslandViewer 484000.gbk
257650059409917600Island text1.7137627.614316.1347Neighbours21BLASTNIslandViewer 576500.gbk
3661579*68422022642Island text1.742830.134422.1647Neighbours21BLASTN+IslandViewer 661579.gbk
41008475103414725673Island text1.6663534.120546.814Neighbours318BLASTN+1008475.gbk
51157294117654819255Island text1.4731632.800329.0535Neighbours317BLASTNIslandViewer 1157294.gbk
61202909122229319385Island text1.883735.832951.9016Neighbours318BLASTN+IslandViewer 1202909.gbk
71234712125909924388Island text1.9668729.210315.187Neighbours21BLASTN+IslandViewer 1234712.gbk
81259356*129990640551Island text1.995729.314226.886Neighbours21BLASTN+1259356.gbk
91397311142063023320Island text2.0914126.799614.7338Neighbours21BLASTN+IslandViewer 1397311.gbk
101492500*151768725188Island text1.7582934.075247.4418Neighbours318BLASTN1492500.gbk
111816864185180734944Island text2.0252228.838315.7807Neighbours21BLASTNIslandViewer 1816864.gbk
122133590215611022521Island text1.6142648.375952.3846Neighbours371BLASTN2133590.gbk
132318374233636817995Island text3.4561829.061314.4719Neighbours21BLASTN+IslandViewer 2318374.gbk
142502689*254589143203Island text2.1317630.162420.2819Neighbours21BLASTN+IslandViewer 2502689.gbk
152634828265722022393Island text2.2865730.057811.22Neighbours21BLASTN+IslandViewer 2634828.gbk
162674385270309928715Island text3.5598732.305614.6414Neighbours21BLASTN+IslandViewer 2674385.gbk
173058523308039421872Island text1.6430737.327828.6312Neighbours347BLASTN+IslandViewer 3058523.gbk
183092456311688224427Island text1.7206638.026733.8398Neighbours318BLASTN+3092456.gbk
193222552324186919318Island text2.9865929.50058.65514Neighbours21BLASTN+IslandViewer 3222552.gbk
203269000329662527626Island text1.7116836.933134.3404Neighbours318BLASTN3269000.gbk
213479000349693117932Island text1.5111131.426334.3891Neighbours21BLASTNIslandViewer 3479000.gbk
223862275388013517861Island text2.0056429.14649.32513Neighbours21BLASTNIslandViewer 3862275.gbk
234054908*407709922192Island text1.6935530.852142.3285Neighbours318BLASTN4054908.gbk
244277937430513027194Island text1.7992444.750148.9654Neighbours32BLASTN+4277937.gbk
254637764466322025457Island text3.1344333.389310.2712Neighbours21BLASTN+IslandViewer 4637764.gbk
264686036470857022535Island text1.5962734.049442.0629Neighbours318BLASTN+4686036.gbk
274714457475809943643Island text1.9167232.8629.4998Neighbours21BLASTN+4714457.gbk
284782635480759924965Island text1.6912632.513845.1622Neighbours318BLASTN+4782635.gbk
295203679523275729079Island text1.5037343.36546.9817Neighbours371BLASTN5203679.gbk
305402000542345921460Island text1.7645329.425748.2445Neighbours318BLASTN5402000.gbk