Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003228: Bacteroides fragilis NCTC 9343, complete genome

NCBI: NC_003228

Host Lineage: Bacteroides fragilis; Bacteroides; Bacteroidaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This organism can become an opportunistic pathogen, infecting anywhere in the body and causing abcess formation. Enterotoxigenic Bacterioides fragilis (ETBF) is associated with diarrheal diseases. Common gut bacterium. This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. Breakdown of complex plant polysaccharides such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides is aided by the many enzymes these organisms produce. Although only a minor component of the human gut microflora, this organism is a major component of clinical specimens and is the most common anaerobe isolated.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17614010225526116Island text1.7200536.394245.0616Neighbours34BLASTN+76140.gbk
240151342352122009Island text1.5621836.821747.3766Neighbours34BLASTN401513.gbk
364866967424125573Island text1.751133.909250.0081Neighbours34BLASTN+648669.gbk
479384681558521740Island text1.5478635.432942.9701Neighbours34BLASTN793846.gbk
594526696732022055Island text1.7051736.495745.1985Neighbours34BLASTN945266.gbk
61045207106884823642Island text1.436634.192654.9092Neighbours34BLASTN1045207.gbk
71732497176509932603Island text1.866942.466638.5403Neighbours327BLASTN+IslandViewer 1732497.gbk
81832838185170918872Island text1.4587334.283848.057Neighbours34BLASTN1832838.gbk
91870953189429023338Island text1.5385834.67937.8182Neighbours34BLASTN+1870953.gbk
102010643208001969377Island text2.2605751.354235.8023Neighbours327BLASTN+IslandViewer 2010643.gbk
112170963*219238921427Island text1.7440234.131853.7958Neighbours34BLASTN2170963.gbk
122245181226875223572Island text2.0633436.551656.5751Neighbours34BLASTN+2245181.gbk
132437288245461717330Island text1.5158233.699841.8747Neighbours34BLASTN+2437288.gbk
142473956249559921644Island text1.5782936.569835.6864Neighbours34BLASTN2473956.gbk
152802859283731434456Island text1.9336443.824240.7594Neighbours32BLASTN+IslandViewer 2802859.gbk
162929006*295209023085Island text1.706133.244852.0349Neighbours34BLASTN2929006.gbk
172973266*299679923534Island text1.8961742.782143.2604Neighbours34BLASTN2973266.gbk
183085793311943733645Island text1.5854933.192840.5757Neighbours34BLASTN+3085793.gbk
193143470316420220733Island text1.70134.465852.0994Neighbours34BLASTN+3143470.gbk
203212500*325550943010Island text1.7251537.970647.5449Neighbours34BLASTN+IslandViewer 3212500.gbk
213323832335210328272Island text1.7895341.952347.2252Neighbours34BLASTN3323832.gbk
223455405*347629320889Island text1.4991436.800833.4267Neighbours34BLASTN+3455405.gbk
233545811*356472818918Island text1.5160534.308144.7314Neighbours34BLASTN3545811.gbk
243582728360148118754Island text1.5079436.843447.5636Neighbours34BLASTN3582728.gbk
253645426*366444019015Island text1.6287331.924953.4596Neighbours34BLASTN+3645426.gbk
263669151369042421274Island text1.6225337.062353.5769Neighbours34BLASTN3669151.gbk
273690596371414723552Island text1.863737.33551.7324Neighbours34BLASTN+3690596.gbk
283752035377147219438Island text1.5478533.602952.0861Neighbours34BLASTN3752035.gbk
293934770396959934830Island text1.7280134.025445.8047Neighbours34BLASTN+3934770.gbk
304449072*446793218861Island text1.5742233.665745.8582Neighbours34BLASTN4449072.gbk
314895326*491459919274Island text1.6873834.341645.7445Neighbours34BLASTN4895326.gbk
325027668504659918932Island text1.7811233.716454.1113Neighbours34BLASTN5027668.gbk