Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_002952: Staphylococcus aureus subsp. aureus MRSA252, complete genome

NCBI: NC_002952

Host Lineage: Staphylococcus aureus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain is a hospital-acquired strain isolated in the United Kingdom, representative of the methicillin-resistant (MRSA) strains. It is one of the two major MRSA strains found in British hospitals in the late 1990's. Causes skin infections. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. This organism is a major cause of nosocomial (hospital-acquired) and community-acquired infections. Continues to be a major cause of mortality and is responsible for a variety of infections including, boils, furuncles, styes, impetigo and other superficial skin infections in humans. Also known to cause more serious infections particularly in the chronically ill or immunocompromised. The ability to cause invasive disease is associated with persistance in the nasal cavity of a host.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115405*3571720313Island text1.5991220.603930.2773Neighbours21BLASTNIslandViewer 15405.gbk
249450051409919600Island text1.8340519.652430.8716Neighbours21BLASTN+494500.gbk
3582365*60318520821Island text1.5382720.995929.4457Neighbours21BLASTN582365.gbk
461046263067520214Island text1.8917420.396434.8489Neighbours21BLASTN610462.gbk
588450090389519396Island text1.5105522.036138.3893Neighbours21BLASTN884500.gbk
61291444*131490923466Island text1.6693517.962729.9793Neighbours21BLASTN1291444.gbk
71349006137209923094Island text1.7318117.22726.3979Neighbours21BLASTN+IslandViewer 1349006.gbk
81497785154549547711Island text1.6734129.268243.606Neighbours325BLASTN+1497785.gbk
91592000162211730118Island text2.005119.779333.3563Neighbours21BLASTN+IslandViewer 1592000.gbk
101917999*194186723869Island text1.8912622.076638.0741Neighbours21BLASTN1917999.gbk
112125750215605630307Island text2.0564419.157532.6423NeighboursBLASTN2125750.gbk
122256000*227809922100Island text1.5282521.218430.028Neighbours21BLASTN2256000.gbk
132390668*241976729100Island text1.7109724.078134.0474Neighbours21BLASTN+IslandViewer 2390668.gbk
142550500257443923940Island text1.7342321.370431.7695Neighbours21BLASTN+2550500.gbk
152653482267706023579Island text1.558420.27633.5059Neighbours21BLASTN+2653482.gbk