Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_002655: Escherichia coli O157:H7 EDL933, complete genome

NCBI: NC_002655

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (substrain) is considered a reference strain of O157:H7, which was first isolated during an outbreak in 1982. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora.E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112000*3357021571Island text2.3379234.872926.5067Neighbours41BLASTNIslandViewer 12000.gbk
226123628140820173Island text1.54237.841130.5373Neighbours41BLASTNIslandViewer PAI DB261236.gbk
330194032759925660Island text2.7996139.076323.7308Neighbours41BLASTN+IslandViewer 301940.gbk
491965493956619913Island text1.5576934.081144.5527Neighbours41BLASTN+IslandViewer 919654.gbk
51053082107777224691Island text2.1869637.814427.6806Neighbours41BLASTN+IslandViewer 1053082.gbk
61103991112782323833Island text2.0081831.01925.271Neighbours41BLASTN+IslandViewer PAI DB1103991.gbk
71332961135150618546Island text1.8748732.938130.1346Neighbours41BLASTN+IslandViewer 1332961.gbk
81413244143751824275Island text2.9487937.410128.2635Neighbours41BLASTNIslandViewer PAI DB1413244.gbk
91448605147337924775Island text2.1087937.154628.9995Neighbours41BLASTN+IslandViewer 1448605.gbk
101655944168171125768Island text3.2199541.58224.9937Neighbours41BLASTN+IslandViewer 1655944.gbk
111909139193312123983Island text1.512938.466726.9339Neighbours51BLASTN+IslandViewer 1909139.gbk
121966464198957123108Island text1.8010132.65927.3135Neighbours41BLASTN+IslandViewer PAI DB1966464.gbk
132015000203595420955Island text1.8921133.658327.9084Neighbours41BLASTN2015000.gbk
142142587*216371121125Island text2.2073733.754123.3107Neighbours41BLASTN+IslandViewer 2142587.gbk
152264773228824723475Island text2.24436.2626.9464Neighbours41BLASTN+IslandViewer 2264773.gbk
162730659276187131213Island text1.5746734.853829.5584Neighbours41BLASTN+IslandViewer 2730659.gbk
172839600287010630507Island text4.3360743.916320.221Neighbours41BLASTNIslandViewer 2839600.gbk
182925787*294624420458Island text2.060531.904624.6224Neighbours41BLASTNIslandViewer 2925787.gbk
193260500*328246521966Island text2.409333.815129.0474Neighbours41BLASTN+IslandViewer 3260500.gbk
203538656*358072742072Island text2.8668436.778627.648Neighbours41BLASTN+IslandViewer 3538656.gbk
213769643*381434344701Island text4.8594943.179519.8613Neighbours41BLASTN+IslandViewer PAI DB3769643.gbk
223919545394618926645Island text2.8263639.188121.2267Neighbours41BLASTN+IslandViewer 3919545.gbk
234606000*462939223393Island text2.7001735.742918.7157Neighbours41BLASTNIslandViewer 4606000.gbk
244653160470328250123Island text3.6945142.39322.2756Neighbours41BLASTN+IslandViewer PAI DB4653160.gbk
254747926477356525640Island text4.140741.061519.2702Neighbours41BLASTN+IslandViewer 4747926.gbk
265194804521379718994Island text1.5531331.623921.6104Neighbours11BLASTN+IslandViewer 5194804.gbk
275382557540664224086Island text2.7649635.231316.7819Neighbours41BLASTN+IslandViewer 5382557.gbk