Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




CU928160: Escherichia coli IAI1 chromosome, complete genome

NCBI: CU928160

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111381*3595024570Island text2.4872434.73232.4552Neighbours41BLASTN11381.gbk
2145276*16477719502Island text1.605529.985429.8148Neighbours41BLASTN+145276.gbk
325693227863921708Island text1.5643434.595625.0622Neighbours51BLASTN+256932.gbk
41232510*125609923590Island text2.54133.829315.9946Neighbours41BLASTN+1232510.gbk
51579375160831928945Island text2.0378331.501421.5779Neighbours41BLASTN+1579375.gbk
61625535164926623732Island text1.628229.401825.6913Neighbours41BLASTN+1625535.gbk
71668842169164522804Island text1.7762335.94826.1234Neighbours41BLASTN+1668842.gbk
81978500*201443135932Island text3.5795839.818418.9074Neighbours41BLASTN+1978500.gbk
92091249*211444123193Island text1.4731329.65121.8662Neighbours41BLASTN2091249.gbk
102155947218736531419Island text4.594443.030323.7883Neighbours41BLASTN+2155947.gbk
112239637*226345123815Island text1.477830.404931.234Neighbours41BLASTN+2239637.gbk
122513000253520022201Island text2.1411631.449519.9622Neighbours41BLASTN+2513000.gbk
132715246*274020524960Island text1.4760932.058630.9538Neighbours41BLASTN+2715246.gbk
142785792*280821622425Island text1.4333937.110952.6739Neighbours41BLASTN+2785792.gbk
152818750*284490226153Island text2.6822636.805525.1481Neighbours41BLASTN+2818750.gbk
163030324*306823137908Island text5.2453243.344818.0281Neighbours41BLASTN+3030324.gbk
173263248328331520068Island text2.3482731.107123.9932Neighbours41BLASTN+3263248.gbk
183344746*336309918354Island text1.8504929.948928.554Neighbours41BLASTN+3344746.gbk
193709081373009921019Island text2.3009931.541115.6414Neighbours41BLASTN+3709081.gbk
203862935*388577322839Island text2.5757235.974514.2849Neighbours41BLASTN3862935.gbk
214248621*427441825798Island text1.4159538.065454.7996Neighbours51BLASTN+4248621.gbk
224395156441536720212Island text1.532331.886323.5676Neighbours41BLASTN+4395156.gbk
234570498*461509944602Island text4.2229243.112921.3485Neighbours41BLASTN+4570498.gbk