Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




AC_000091: Escherichia coli W3110 DNA, complete genome

NCBI: AC_000091

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1144577*16459920023Island text1.6214230.03325.8594Neighbours41BLASTN+144577.gbk
227332530179728473Island text1.8633636.573316.0608Neighbours41BLASTN+273325.gbk
330371932647122753Island text1.8021830.055320.24Neighbours41BLASTN+303719.gbk
455892058720428285Island text1.9451134.327122.4805Neighbours41BLASTN+558920.gbk
51083798*110686123064Island text1.5598627.05531.8675Neighbours41BLASTN+1083798.gbk
61191353*122209930747Island text2.1367836.461620.4169Neighbours41BLASTN+1191353.gbk
71407693*143069823006Island text1.5946731.201439.7003Neighbours41BLASTN+1407693.gbk
81521976154430422329Island text1.5214629.845632.6288Neighbours41BLASTN+1521976.gbk
91574000159980025801Island text1.9554131.082622.1477Neighbours41BLASTN+1574000.gbk
101627049165562928581Island text1.8006434.461123.2374Neighbours41BLASTN+1627049.gbk
112027648*207009942452Island text1.5677128.520925.1173Neighbours41BLASTN+2027648.gbk
122096672212665729986Island text3.1511939.501324.0775Neighbours41BLASTN+2096672.gbk
132185369*220724521877Island text1.66129.021227.1059Neighbours41BLASTN2185369.gbk
142379670240484125172Island text1.7173228.079420.1547Neighbours41BLASTN2379670.gbk
152462461248878526325Island text1.9175430.098420.3536Neighbours41BLASTN+2462461.gbk
162747520*280214854629Island text2.2387336.33724.3571Neighbours41BLASTN+2747520.gbk
172872000289652624527Island text1.5393732.563225.9106Neighbours41BLASTN+2872000.gbk
182976293300863132339Island text4.4389140.736817.352Neighbours41BLASTN+2976293.gbk
193180275319962119347Island text2.0726431.856525.4802Neighbours41BLASTN+3180275.gbk
203258377*328148023104Island text2.0104731.946627.7057Neighbours41BLASTN+3258377.gbk
213827856*385515527300Island text3.4216839.647718.9897Neighbours41BLASTN3827856.gbk
223976888399503018143Island text1.8320528.50816.3905Neighbours41BLASTN+3976888.gbk
233995233402122325991Island text1.920429.462521.4216Neighbours41BLASTN+3995233.gbk
244313167433668223516Island text1.5624229.596321.7505Neighbours41BLASTN+4313167.gbk
254472000*449474322744Island text1.6068428.471516.488Neighbours41BLASTN+4472000.gbk
264501430*452291521486Island text1.6170231.53526.973Neighbours41BLASTN+4501430.gbk
274534935455904124107Island text2.1016332.518824.8558Neighbours41BLASTN+4534935.gbk
284569379459254323165Island text1.6631126.377113.942Neighbours41BLASTN+4569379.gbk