Pre_GI Gene

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Host: NC_017328 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017328:2153083 Shigella flexneri 2002017 chromosome, complete genome

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
215178221530861305histidinol dehydrogenaseQuickGO ontologyBLASTP
215308321541531071histidinol-phosphate aminotransferaseQuickGO ontologyBLASTP
215415321552201068imidazole glycerol-phosphate dehydratasehistidinol phosphataseQuickGO ontologyBLASTP
21552202155810591imidazole glycerol phosphate synthase subunit hisHQuickGO ontologyBLASTP
215581021565477381-5-phosphoribosyl-5-5- phosphoribosylaminomethylideneamino imidazole-4-carboxamide isomeraseQuickGO ontologyBLASTP
21565292157305777imidazole glycerol phosphate synthase subunit HisFQuickGO ontologyBLASTP
21572992157910612Phosphoribosyl-AMP cyclohydrolasePhosphoribosyl-ATP pyrophosphataseQuickGO ontologyBLASTP
215809621591091014Chain length determinant proteinQuickGO ontologyBLASTP
2160589216199514076-phosphogluconate dehydrogenaseQuickGO ontologyBLASTP
21621042162463360hypothetical proteinBLASTP
21624602163011552hypothetical proteinBLASTP
21631122163711600hypothetical proteinBLASTP
21638822164373492hypothetical proteinBLASTP
21644312164820390Protein rfbJQuickGO ontologyBLASTP
21648832165257375Bactoprenol-linked glucose translocaseQuickGO ontologyBLASTP
216526121664091149O-antigen polymeraseQuickGO ontologyBLASTP
21664292167334906dTDP-rhamnosyl transferase rfbGQuickGO ontologyBLASTP
21673272168217891dTDP-rhamnosyl transferase rfbFQuickGO ontologyBLASTP
216824721695031257putative O-antigen transporterQuickGO ontologyBLASTP
21695192170064546dTDP-4-dehydrorhamnose 35-epimeraseQuickGO ontologyBLASTP
21700692170947879Glucose-1-phosphate thymidylyltransferase 1QuickGO ontologyBLASTP
21710062171905900dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
217190521729901086dTDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
21733632174256894UTP--glucose-1-phosphate uridylyltransferaseQuickGO ontologyBLASTP
217443121758251395Colanic acid biosynthesis protein wcaMQuickGO ontologyBLASTP
217583621770561221putative colanic acid biosynthesis glycosyl transferaseQuickGO ontologyBLASTP
217705321783331281putative galactokinaseQuickGO ontologyBLASTP
217851321799911479putative Membrane protein involved in the export of O-antigen and teichoic acidQuickGO ontologyBLASTP
217999321813871395undecaprenyl-phosphate galactose phosphotransferaseQuickGO ontologyBLASTP
218144221828121371phosphomannomutaseQuickGO ontologyBLASTP
21828382182996159hypothetical proteinBLASTP
218300521844411437Mannose-1-phosphate guanyltransferaseQuickGO ontologyBLASTP