Pre_GI: BLASTP Hits

Some Help

Query: NC_017328:2153083:2165261 Shigella flexneri 2002017 chromosome, complete genome

Start: 2165261, End: 2166409, Length: 1149

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:2098736:2110960211096021121081149Shigella flexneri 2a str. 301, complete genomeO-antigen polymerase1e-151536
NC_004741:2081649:2093827209382720949751149Shigella flexneri 2a str. 2457T, complete genomeO-antigen polymerase1e-151536
NC_008258:2100646:2112825211282521139731149Shigella flexneri 5 str. 8401, complete genomeO-antigen polymerase1e-151536
NC_014207:1366766:1379920137992013811821263Methylotenera sp. 301 chromosome, complete genomehypothetical protein1e-1377.4
NC_014541:1165991:1179072117907211802381167Ferrimonas balearica DSM 9799 chromosome, complete genomeO-antigen polymerase4e-0962.8