Pre_GI Gene

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Host: NC_017270 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017270:1755552 Vibrio cholerae LMA3984-4 chromosome chromosome I, complete

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1759899175998385tRNA-SerQuickGO ontologyBLASTP
176029917615671269Phage integraseQuickGO ontologyBLASTP
176162317626301008Sialic acid-induced transmembrane proteinQuickGO ontologyBLASTP
176264517637991155Sialic acid-induced transmembrane proteinQuickGO ontologyBLASTP
17639811764817837Sialic acid utilization regulator RpiR familyQuickGO ontologyBLASTP
17649461765842897N-acetylneuraminate lyaseQuickGO ontologyBLASTP
176588117671641284TRAP-type transport system large permeaseQuickGO ontologyBLASTP
17671721767681510TRAP-type transport system small permeasetransporterQuickGO ontologyBLASTP
17677441768709966TRAP-type transport system periplasmic proteinQuickGO ontologyBLASTP
17692061769622417N-acetylmannosamine-6-phosphate 2-epimeraseQuickGO ontologyBLASTP
17696101770473864N-acetylmannosamine kinaseQuickGO ontologyBLASTP
177047717716131137N-acetylglucosamine-6-phosphate deacetylaseQuickGO ontologyBLASTP
177203417743792346SialidaseQuickGO ontologyBLASTP
17745271774703177transcriptional regulatorQuickGO ontologyBLASTP
17748471775263417DNA repair protein RadCQuickGO ontologyBLASTP
177526717762801014transposase OrfAB subunit BQuickGO ontologyBLASTP
17764771776911435N-acetylneuraminate lyaseQuickGO ontologyBLASTP
17799531780648696N-acetylmannosamine-6-phosphate 2-epimeraseQuickGO ontologyBLASTP
17806361781499864N-acetylmannosamine kinaseQuickGO ontologyBLASTP
178150317825341032N-acetylglucosamine-6-phosphate deacetylaseQuickGO ontologyBLASTP
17854141785614201DNA repair protein RadCQuickGO ontologyBLASTP
17856481785782135DNA repair protein RadCQuickGO ontologyBLASTP
17858711786299429hypothetical proteinBLASTP
17863501786796447hypothetical proteinBLASTP
17869031787889987hypothetical proteinBLASTP
17879221788140219hypothetical proteinBLASTP
17887651788965201transcriptional regulator AlpA like proteinQuickGO ontologyBLASTP
17895961789799204hypothetical proteinBLASTP
17897911790264474hypothetical proteinBLASTP
17903881790783396Cell division inhibitorQuickGO ontologyBLASTP
17907801790893114hypothetical protein
179092417923121389Deoxyribodipyrimidine photolyase single-strand- specificQuickGO ontologyBLASTP
17923091793016708C-factor putativeQuickGO ontologyBLASTP
17930271793242216hypothetical proteinBLASTP
179333917950991761Sigma-54 dependent transcriptional regulatorQuickGO ontologyBLASTP
179538317969031521Aldehyde dehydrogenaseQuickGO ontologyBLASTP
17972021797642441Phosphotransferase system mannitolfructose- specific IIA domain proteinQuickGO ontologyBLASTP
179765417990571404PTS system fructose-specific transporter subunit IIBCQuickGO ontologyBLASTP