Pre_GI Gene

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Host: NC_014323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:3292082 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
329208232946552574nitrite reductase large subunitQuickGO ontologyBLASTP
32948023295164363nitrite reductase small subunitQuickGO ontologyBLASTP
329516632964071242FAD-dependent pyridine nucleotide-disulfide oxidoreductaseQuickGO ontologyBLASTP
329644932992172769assimilatory nitrate reductase large subunitQuickGO ontologyBLASTP
3299285329936177tRNA-ProQuickGO ontology
329968033007141035retron reverse transcriptaseQuickGO ontologyBLASTP
33007043300994291XRE family transcription regulator proteinQuickGO ontologyBLASTP
33010393301272234hypothetical proteinBLASTP
33016653301901237hypothetical protein
33020423302581540phage anti-repressor proteinQuickGO ontologyBLASTP
33028123303363552hypothetical proteinBLASTP
330363833052331596hypothetical proteinBLASTP
330523033063331104IS1404 transposaseQuickGO ontologyBLASTP
33063473306697351BLASTP
33073053307802498signal peptide proteinQuickGO ontologyBLASTP
33079693308823855hypothetical protein
330904733107381692methyl-accepting chemotaxis transducer transmembrane I proteinQuickGO ontologyBLASTP
331080633124131608methyl-accepting chemotaxis transducer transmembrane I proteinQuickGO ontologyBLASTP
33127233313181459acetyltransferase domain-containing proteinQuickGO ontologyBLASTP
33131783313495318hypothetical protein
331358233151171536hypothetical proteinBLASTP
331544333170351593peptide chain release factor 3QuickGO ontologyBLASTP
33174633317996534inorganic pyrophosphataseQuickGO ontologyBLASTP
331823633194351200porphyrin biosynthesis proteinQuickGO ontologyBLASTP