Pre_GI Gene

Some Help

Host: NC_014323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:3195178 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
31943483195181834citrate lyase beta subunitQuickGO ontologyBLASTP
319517831963771200acyl-CoA transferasescarnitine dehydrataseQuickGO ontologyBLASTP
319640231975681167acyl-CoA dehydrogenaseQuickGO ontologyBLASTP
31976163198476861hypothetical proteinBLASTP
31986823199647966LysR family transcription regulator proteinQuickGO ontologyBLASTP
31996533200417765transmembrane permeaseQuickGO ontologyBLASTP
32004603200618159hypothetical protein
320064832014367893-oxoacyl-acyl-carrier-protein reductaseQuickGO ontologyBLASTP
32018273202492666hypothetical proteinBLASTP
320325932048661608mrr restriction system proteinQuickGO ontologyBLASTP
32049403205164225BLASTP
320520532069321728hypothetical proteinBLASTP
32069873207385399hypothetical proteinBLASTP
32077693207903135hypothetical proteinBLASTP
32081803208392213hypothetical protein
32084613208607147prophage antirepressor proteinQuickGO ontologyBLASTP
32086503209090441hypothetical protein
320912632106311506Zn-dependent protease TldD proteinQuickGO ontologyBLASTP
321066432120371374Zn-dependent protease TLDE proteinQuickGO ontologyBLASTP
321203432138181785ABC transporter permease and ATPase components proteinQuickGO ontologyBLASTP
32138153214234420biopolymer transport ExbDTolR proteinQuickGO ontologyBLASTP
32142453214976732biopolymer transport transmembrane proteinQuickGO ontologyBLASTP
32150313215828798hypothetical proteinBLASTP
321581832182082391TonB-dependent ferric siderophore receptor proteinQuickGO ontologyBLASTP
32186243219088465glutamate uptake transcription regulator proteinQuickGO ontologyBLASTP