Pre_GI Gene

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Host: NC_012792 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012792:547967 Variovorax paradoxus S110 chromosome 2, complete genome

Host Lineage: Variovorax paradoxus; Variovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Soil. Variovorax paradoxus S110 is able to grow autotrophically using hydrogen gas and carbon dioxide for energy and carbon. Variovorax paradoxus is a nutritionally diverse organism which is commonly isolated from soil. Strains of this organism are able to degrade a number of compounds such as explosives and pesticides. Variovorax paradoxus is also a plant-growth promoting organism, increasing the resistance of the plant to disease and heavy metals.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5479675561598193putative carbohydrate bindingQuickGO ontologyBLASTP
556827557612786extracellular solute-binding protein family 3QuickGO ontologyBLASTP
557628558299672polar amino acid ABC transporter inner membrane subunitQuickGO ontologyBLASTP
558304558984681polar amino acid ABC transporter inner membrane subunitQuickGO ontologyBLASTP
558999559586588hypothetical protein
559589560341753ABC transporter relatedQuickGO ontologyBLASTP
560693561349657Domain of unknown function DUF1814QuickGO ontologyBLASTP
561346561876531transcriptional regulator XRE familyQuickGO ontologyBLASTP
562507563256750IstB domain protein ATP-binding proteinQuickGO ontologyBLASTP
5632535647941542Integrase catalytic regionQuickGO ontologyBLASTP
564989565291303hypothetical proteinBLASTP
565388566218831hypothetical protein
566206566639434
5668815699673087ABC transporterQuickGO ontologyBLASTP
569986570252267BLASTP
570430570834405hypothetical protein
570831571349519hypothetical protein
571494572096603hypothetical proteinBLASTP
572089572793705hypothetical protein
573131573571441transcriptional regulator XRE familyQuickGO ontologyBLASTP
573593573793201hypothetical proteinBLASTP
573834574268435hypothetical protein
574300574707408hypothetical proteinBLASTP
574714574941228hypothetical protein
575081575431351hypothetical protein
575521576438918transcriptional regulator LysR familyQuickGO ontologyBLASTP
576488576667180hypothetical protein
576713577027315hypothetical protein
577220577417198BLASTP
5776525788841233Extracellular ligand-binding receptorQuickGO ontologyBLASTP
5789225805591638AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
581037581966930Enoyl-CoA hydrataseisomeraseQuickGO ontologyBLASTP
5819845831891206acetyl-CoA acetyltransferaseQuickGO ontologyBLASTP
58319558527920853-hydroxyacyl-CoA dehydrogenase NAD-bindingQuickGO ontologyBLASTP
585880586536657transcriptional regulator TetR familyQuickGO ontologyBLASTP
586911587717807Enoyl-CoA hydrataseisomeraseQuickGO ontologyBLASTP