Pre_GI Gene

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Host: NC_012582 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012582:272320 Vibrio cholerae O395 chromosome chromosome I, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae O395 is a classical O1 serotype strain of the Ogawa biotype. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27104027235913203-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
272320273108789hypothetical proteinBLASTP
2731052741541050putative lipopolysaccharide biosynthesis proteinQuickGO ontologyBLASTP
2741512751911041ADP-heptose--LPS heptosyltransferase IIQuickGO ontologyBLASTP
2751882763871200hypothetical proteinBLASTP
276389276955567transferase hexapeptide repeat familyQuickGO ontologyBLASTP
2769632787351773hypothetical proteinBLASTP
278894279838945ADP-L-glycero-D-mannoheptose-6-epimeraseQuickGO ontologyBLASTP
2802802816771398mannose-1-phosphate guanylyltransferaseQuickGO ontologyBLASTP
2816802830711392phosphomannomutaseQuickGO ontologyBLASTP
2830742841951122GDP-mannose 46-dehydrataseQuickGO ontologyBLASTP
2842062853091104perosamine synthaseQuickGO ontologyBLASTP
2853062866971392rfbG proteinQuickGO ontologyBLASTP
286669287463795lipopolysaccharideO-antigen transport proteinQuickGO ontologyBLASTP
287402288217816lipopolysaccharideO-antigen transport proteinQuickGO ontologyBLASTP
288256288498243putative acyl carrier proteinQuickGO ontologyBLASTP
2885042899191416rfbL proteinQuickGO ontologyBLASTP
2899282910521125putative iron-containing alcohol dehydrogenaseQuickGO ontologyBLASTP
2910432935202478acyl protein synthaseacyl-CoA reductaseQuickGO ontologyBLASTP
293590294156567acetyltransferase RfbO CysELacALpxANodL familyQuickGO ontologyBLASTP
29430629438681IS1004 transposaseQuickGO ontologyBLASTP
295841296701861rfbT-related proteinQuickGO ontologyBLASTP
2967362979681233lipopolysaccharide biosynthesis protein RfbVQuickGO ontologyBLASTP
2978562997211866mannosyl-transferaseQuickGO ontologyBLASTP
299782299922141hypothetical proteinBLASTP
299874300845972UDP-glucose 4-epimeraseQuickGO ontologyBLASTP
300853301407555putative galactosyl-transferaseQuickGO ontologyBLASTP
3015503029171368hypothetical proteinBLASTP
3031793044171239hypothetical proteinBLASTP
304472305044573hypothetical proteinBLASTP
305044305967924D-isomer specific 2-hydroxyacid dehydrogenase family proteinQuickGO ontologyBLASTP
305960306628669hypothetical proteinBLASTP