Pre_GI Gene

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Host: NC_011593 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011593:1202726 Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: This strain was isolated from human infant feces. Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium longum is found in adult humans and formula fed infants as a normal component of gut flora.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12027261203697972DNA polymerase III subunit deltaQuickGO ontologyBLASTP
12037181204284567hypothetical proteinBLASTP
12043461205164819peptidase M22 glycoproteaseQuickGO ontologyBLASTP
12051811205735555ribosomal-protein-alanine acetyltransferaseQuickGO ontologyBLASTP
120573212067751044DNA-bindingiron metalloproteinAP endonucleaseQuickGO ontologyBLASTP
1206966120704176tRNA-AsnQuickGO ontologyBLASTP
12071081207635528hypothetical proteinBLASTP
120766112087281068hypothetical proteinBLASTP
12089511209340390hypothetical proteinBLASTP
120934512104691125hypothetical proteinBLASTP
12106801211489810Integrase catalytic regionQuickGO ontologyBLASTP
121154412128091266transposase IS116IS110IS902 family proteinQuickGO ontologyBLASTP
12129041213302399hypothetical proteinBLASTP
12133251214044720hypothetical proteinBLASTP
12142551215157903hypothetical proteinBLASTP
121516712163031137Methylase of polypeptide chain release factors-like proteinQuickGO ontologyBLASTP
121639812181971800ABC transporterQuickGO ontologyBLASTP
12182841218889606BLASTP
12189191219113195BLASTP
12191741219482309hypothetical proteinBLASTP
12196211219965345hypothetical proteinBLASTP
12199751220232258hypothetical proteinBLASTP
12203571220704348hypothetical proteinBLASTP
12208761221160285hypothetical proteinBLASTP
12214061221945540hypothetical protein
122202012231351116Integrase catalytic regionQuickGO ontologyBLASTP
12232741223726453BLASTP
12237161224279564BLASTP
122443712255311095ABC transporterQuickGO ontologyBLASTP
12255281226367840hypothetical proteinBLASTP
12263641227215852hypothetical proteinBLASTP
12272821227770489hypothetical proteinBLASTP
12277731228123351hypothetical proteinBLASTP
122815112295361386integral membrane sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
12295291230212684two component transcriptional regulator LuxR familyQuickGO ontologyBLASTP
1230418123049073tRNA-AsnQuickGO ontologyBLASTP
1230534123060673tRNA-AsnQuickGO ontologyBLASTP