Pre_GI Gene

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Host: NC_011147 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:2814664 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
281466428167422079transcriptional activator of the formate hydrogenlyase systemQuickGO ontologyBLASTP
28168042817148345hypothetical proteinBLASTP
28173302818247918Iron transporter periplasmic-binding proteinQuickGO ontologyBLASTP
28182442819065822Iron transporter ATP-binding proteinQuickGO ontologyBLASTP
28190622819922861Iron transporter inner membrane proteinQuickGO ontologyBLASTP
28199132820761849Iron transporter inner membrane proteinQuickGO ontologyBLASTP
28207332820942210hypothetical proteinBLASTP
28210382821793756AraC family transcriptional regulatorQuickGO ontologyBLASTP
28221782823065888AraC family transcriptional regulatorQuickGO ontologyBLASTP
28234112823863453hypothetical proteinBLASTP
28238792824550672oxygen-regulated invasion proteinQuickGO ontologyBLASTP
28245072825085579oxygen-regulated invasion proteinQuickGO ontologyBLASTP
28250782825836759pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
28258332826138306pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
28261572826399243pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
282642428276021179pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
28279182828847930araC family transcriptional regulatorQuickGO ontologyBLASTP
282993828315991662invasion protein regulatorQuickGO ontologyBLASTP
28316172832099483cell invasion proteinQuickGO ontologyBLASTP
283215328337841632stpA-like proteinQuickGO ontologyBLASTP
28337712834121351chaperoneQuickGO ontologyBLASTP
28341902834450261hypothetical proteinBLASTP
28344942834742249acyl carrier proteinQuickGO ontologyBLASTP
283476128368182058pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
283683728378591023pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
283792928391581230pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
283918628409671782pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
28409702841467498hypothetical proteinBLASTP
284160528426751071surface presentation of antigens protein SpaSQuickGO ontologyBLASTP
28426622843453792virulence secretory proteinQuickGO ontologyBLASTP
28434572843717261virulence secretory proteinQuickGO ontologyBLASTP
28437432844417675surface presentation of antigens protein SpaPQuickGO ontologyBLASTP
28444072845318912surface presentation of antigens protein SpaOQuickGO ontologyBLASTP
284531828463281011antigen presentation protein SpaNQuickGO ontologyBLASTP
28463282846771444virulence-associated secretory proteinQuickGO ontologyBLASTP
284674928480441296ATP synthase SpaLQuickGO ontologyBLASTP
28480412848448408virulence-associated secretory proteinQuickGO ontologyBLASTP
284847228505292058hypothetical proteinBLASTP
285055428516721119cell invasion proteinQuickGO ontologyBLASTP
285166928533571689virulence secretory proteinQuickGO ontologyBLASTP
28533542854103750AraC-family regulatory proteinQuickGO ontologyBLASTP
28544602854903444cell adheranceinvasion proteinQuickGO ontologyBLASTP
28552982855516219hypothetical proteinBLASTP
28557862856067282hypothetical proteinBLASTP
28560672856591525hypothetical proteinBLASTP
28581442858329186hypothetical proteinBLASTP
28583382858664327hypothetical proteinBLASTP
285886528613902526DNA mismatch repair protein MutSQuickGO ontologyBLASTP
28614462861826381hypothetical proteinBLASTP
286182328630311209membrane transport proteinQuickGO ontologyBLASTP
28631402864051912LysR family transcriptional regulatorQuickGO ontologyBLASTP
286409328655891497permeaseQuickGO ontologyBLASTP
28655862866536951hypothetical proteinBLASTP