Pre_GI Gene

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Host: NC_009831 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009831:1255995 Shewanella sediminis HAW-EB3, complete genome

Host Lineage: Shewanella sediminis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella sediminis was isolated from sediment taken at a depth of 215 meters from an unexploded-ordinance-dumping site 50 nautical miles from Halifax Harbor, Canada in the Atlantic Ocean. This organism is able to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) anaerobically at 10 degrees C. RDX is a member of a family of nitramine compounds which are used in the production of explosives. Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
125599512573441350Glutamate--putrescine ligaseQuickGO ontologyBLASTP
125766212587621101extracellular solute-binding protein family 1QuickGO ontologyBLASTP
125883812600011164spermidineputrescine ABC transporter ATPase subunitQuickGO ontologyBLASTP
12600131260918906binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP
12609151261742828Ornithine carbamoyltransferaseQuickGO ontologyBLASTP
126191412632001287FAD dependent oxidoreductaseQuickGO ontologyBLASTP
126344912655662118methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP
126571012675031794putative glutamate synthase NADPHQuickGO ontologyBLASTP
1267500126932918302-ketoglutarate NADP oxidoreductase alpha subunitQuickGO ontologyBLASTP
126940512704571053putative ferredoxin oxidoreductase beta subunitQuickGO ontologyBLASTP
12705871271285699hypothetical proteinBLASTP
12721131272535423hypothetical protein
127310712749451839RNA polymerase sigma 70 subunit RpoD familyQuickGO ontologyBLASTP
127506812767891722DNA primaseQuickGO ontologyBLASTP
12768871277330444GatBYqeY domain proteinQuickGO ontologyBLASTP
12773371277552216ribosomal protein S21QuickGO ontologyBLASTP
127794212789551014O-sialoglycoprotein endopeptidaseQuickGO ontologyBLASTP